ENSG00000136944


Homo sapiens

Features
Gene ID: ENSG00000136944
  
Biological name :LMX1B
  
Synonyms : LIM homeobox transcription factor 1 beta / LMX1B / O60663
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q33.3
Gene start: 126614443
Gene end: 126701032
  
Corresponding Affymetrix probe sets: 208487_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453580
Ensembl peptide - ENSP00000347684
Ensembl peptide - ENSP00000362573
Ensembl peptide - ENSP00000436930
NCBI entrez gene - 4010     See in Manteia.
OMIM - 602575
RefSeq - NM_001174146
RefSeq - NM_001174147
RefSeq - NM_002316
RefSeq Peptide - NP_001167617
RefSeq Peptide - NP_001167618
RefSeq Peptide - NP_002307
swissprot - O60663
swissprot - B7ZLH2
Ensembl - ENSG00000136944
  
Related genetic diseases (OMIM): 161200 - Nail-patella syndrome, 161200

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmx1baENSDARG00000104815Danio rerio
 lmx1bbENSDARG00000068365Danio rerio
 LMX1BENSGALG00000040582Gallus gallus
 Lmx1bENSMUSG00000038765Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMX1A / Q8TE12 / LIM homeobox transcription factor 1 alphaENSG0000016276163
LHX1 / P48742 / LIM homeobox 1ENSG0000027370630
LHX3 / Q9UBR4 / LIM homeobox 3ENSG0000010718729
LHX5 / Q9H2C1 / LIM homeobox 5ENSG0000008911628
ISL2 / Q96A47 / ISL LIM homeobox 2ENSG0000015955628
LHX4 / Q969G2 / LIM homeobox 4ENSG0000012145428
LHX8 / Q68G74 / LIM homeobox 8ENSG0000016262425
ISL1 / P61371 / ISL LIM homeobox 1ENSG0000001608225
LHX9 / Q9NQ69 / LIM homeobox 9ENSG0000014335525
LHX6 / Q9UPM6 / LIM homeobox 6ENSG0000010685224
LHX2 / P50458 / LIM homeobox 2ENSG0000010668922
LMO4 / P61968 / LIM domain only 4ENSG0000014301315
LMO1 / P25800 / LIM domain only 1ENSG0000016640714
LMO2 / P25791 / LIM domain only 2ENSG0000013536312
LMO3 / Q8TAP4 / LIM domain only 3ENSG0000004854012


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development NAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0007275 multicellular organism development NAS
 biological_processGO:0009953 dorsal/ventral pattern formation ISS
 biological_processGO:0030182 neuron differentiation ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II TAS
 biological_processGO:0071542 dopaminergic neuron differentiation ISS
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding ISS
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0000983 transcription factor activity, RNA polymerase II core promoter sequence-specific DNA binding ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000099 Glomerulonephritis 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001032 Aplasia of the distal interphalangeal creases "Absence of the distal interphalangeal flexion creases of the fingers." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001377 Limited elbow extension 
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 HP:0001386 Joint swelling 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001598 Koilonychia 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001798 Anonychia "Total absence of nails." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001807 Nail ridging 
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002633 Vasculitis 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002758 Osteoarthritis 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002967 Cubitus valgus 
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 HP:0002999 Dislocation of patella "The kneecap normally is located within the groove termed trochlea on the distal femur and can slide up and down in it. Patellar dislocation occurs if the patella fully dislocates out of the groove." [HPO:curators]
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 HP:0003997 Hypoplastic radial head 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005255 Absence of pectoralis minor muscle 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006424 Elongated radius with hypoplasia of radial head 
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 HP:0006437 Disproportionate prominence of the femoral medial condyle 
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 HP:0006443 Patellar aplasia "Absence of the patella." [HPO:curators]
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 HP:0006498 Aplasia/Hypoplasia of the patella "Absence or underdevelopment of the patella." [HPO:curators]
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 HP:0006633 Glenoid hypoplasia "Underdevelopment of the glenoid fossa, which is the cavity in the lateral part of the scapula which articulates with the head of the humerus." [HPO:curators]
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 HP:0006650 Thickening of the lateral border of the scapula 
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 HP:0006657 Hypoplasia of first ribs 
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 HP:0009760 Antecubital pterygium "Pterygium affecting the elbow. This is a cutaneous web that can lead to severe flexion contracture of the elbow joint. Antecubital pterygium can be unilateral, bilateral, symmetric, or asysmmetric." [HPO:curators]
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 HP:0009780 Iliac horns "Horn-like malformations of the iliac crests with symmetrical bilateral central posterior iliac processes. A characteristic finding in the Nail-Patella syndrome. Iliac horns are visible on X-ray and may be palpable, but are asymptomatic." [HPO:curators]
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 HP:0009781 Lester s sign "A zone of darker pigmentation around the central part of the iris with a roughly cloverleaf or flower shape." [HPO:curators]
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 HP:0009783 Biceps aplasia "Absence of the biceps muscle." [HPO:curators]
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 HP:0009785 Triceps aplasia "Absence of the triceps muscle." [HPO:curators]
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 HP:0009788 Quadriceps aplasia "Absence of the quadriceps muscle." [HPO:curators]
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 HP:0012376 Microphakia "Abnormal smallness of the `lens` (FMA:58241)." [HPO:probinson]
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 HP:0100777 Exostoses 
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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