ENSG00000273706


Homo sapiens

Features
Gene ID: ENSG00000273706
  
Biological name :LHX1
  
Synonyms : LHX1 / LIM homeobox 1 / P48742
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q12
Gene start: 36936785
Gene end: 36944612
  
Corresponding Affymetrix probe sets: 206230_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000477829
Ensembl peptide - ENSP00000481496
NCBI entrez gene - 3975     See in Manteia.
OMIM - 601999
RefSeq - NM_005568
RefSeq Peptide - NP_005559
swissprot - A0A087WY40
swissprot - P48742
Ensembl - ENSG00000273706
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lhx1aENSDARG00000014018Danio rerio
 lhx1bENSDARG00000007944Danio rerio
 LHX1ENSGALG00000005409Gallus gallus
 Lhx1ENSMUSG00000018698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LHX5 / Q9H2C1 / LIM homeobox 5ENSG0000008911674
LHX3 / Q9UBR4 / LIM homeobox 3ENSG0000010718737
LHX4 / Q969G2 / LIM homeobox 4ENSG0000012145437
LMX1B / O60663 / LIM homeobox transcription factor 1 betaENSG0000013694430
LMX1A / Q8TE12 / LIM homeobox transcription factor 1 alphaENSG0000016276129
LHX9 / Q9NQ69 / LIM homeobox 9ENSG0000014335525
ISL2 / Q96A47 / ISL LIM homeobox 2ENSG0000015955625
LHX2 / P50458 / LIM homeobox 2ENSG0000010668925
ISL1 / P61371 / ISL LIM homeobox 1ENSG0000001608224
LHX6 / Q9UPM6 / LIM homeobox 6ENSG0000010685223
LHX8 / Q68G74 / LIM homeobox 8ENSG0000016262422
LMO4 / P61968 / LIM domain only 4ENSG0000014301314
LMO1 / P25800 / LIM domain only 1ENSG0000016640712
LMO3 / Q8TAP4 / LIM domain only 3ENSG0000004854011
LMO2 / P25791 / LIM domain only 2ENSG0000013536310


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001781  Zinc finger, LIM-type
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001655 urogenital system development IEA
 biological_processGO:0001656 metanephros development IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0001702 gastrulation with mouth forming second IEA
 biological_processGO:0001705 ectoderm formation IEA
 biological_processGO:0001706 endoderm formation IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0001823 mesonephros development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007267 cell-cell signaling IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0008045 motor neuron axon guidance IEA
 biological_processGO:0009653 anatomical structure morphogenesis IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0009880 embryonic pattern specification IEA
 biological_processGO:0009887 animal organ morphogenesis TAS
 biological_processGO:0009948 anterior/posterior axis specification IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010842 retina layer formation IEA
 biological_processGO:0021510 spinal cord development IEA
 biological_processGO:0021517 ventral spinal cord development IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0021537 telencephalon development IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0021702 cerebellar Purkinje cell differentiation IEA
 biological_processGO:0021871 forebrain regionalization IEA
 biological_processGO:0021937 cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0032525 somite rostral/caudal axis specification IEA
 biological_processGO:0035502 metanephric part of ureteric bud development IEA
 biological_processGO:0035846 oviduct epithelium development IEA
 biological_processGO:0035847 uterine epithelium development IEA
 biological_processGO:0035849 nephric duct elongation IEA
 biological_processGO:0035852 horizontal cell localization IEA
 biological_processGO:0040019 positive regulation of embryonic development IEA
 biological_processGO:0044344 cellular response to fibroblast growth factor stimulus IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0048646 anatomical structure formation involved in morphogenesis IEA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IEA
 biological_processGO:0048793 pronephros development IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0060059 embryonic retina morphogenesis in camera-type eye IEA
 biological_processGO:0060065 uterus development IEA
 biological_processGO:0060066 oviduct development IEA
 biological_processGO:0060067 cervix development IEA
 biological_processGO:0060068 vagina development IEA
 biological_processGO:0060322 head development IEA
 biological_processGO:0060429 epithelium development IEA
 biological_processGO:0061205 paramesonephric duct development IEA
 biological_processGO:0072001 renal system development IEA
 biological_processGO:0072049 comma-shaped body morphogenesis IEA
 biological_processGO:0072050 S-shaped body morphogenesis IEA
 biological_processGO:0072077 renal vesicle morphogenesis IEA
 biological_processGO:0072164 mesonephric tubule development IEA
 biological_processGO:0072177 mesonephric duct development IEA
 biological_processGO:0072178 nephric duct morphogenesis IEA
 biological_processGO:0072224 metanephric glomerulus development IEA
 biological_processGO:0072278 metanephric comma-shaped body morphogenesis IEA
 biological_processGO:0072283 metanephric renal vesicle morphogenesis IEA
 biological_processGO:0072284 metanephric S-shaped body morphogenesis IEA
 biological_processGO:0090009 primitive streak formation IEA
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0097379 dorsal spinal cord interneuron posterior axon guidance ISS
 biological_processGO:0097477 lateral motor column neuron migration IEA
 biological_processGO:2000543 positive regulation of gastrulation IEA
 biological_processGO:2000744 positive regulation of anterior head development IEA
 biological_processGO:2000768 positive regulation of nephron tubule epithelial cell differentiation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003714 transcription corepressor activity ISS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000049 Shawl scrotum "A condition in which the upper scrotal skin rises over the base of the penis." [HPO:curators]
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 HP:0000070 Ureterocele 
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 HP:0000083 Renal failure 
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000717 Autism 
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 HP:0000819 Diabetes mellitus 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001562 Oligohydramnios 
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 HP:0002059 Cerebral atrophy 
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 HP:0002463 Language impairment 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0100801 Pancreatic aplasia "`Aplasia` (MPATH:58) of the `pancreas` (FMA:7198)." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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