ENSMUSG00000030226


Mus musculus

Features
Gene ID: ENSMUSG00000030226
  
Biological name :Lmo3
  
Synonyms : Lmo3 / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA. / Q8BZL8
  
Possible biological names infered from orthology : LIM domain only 3 / Q8TAP4
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: G1
Gene start: 138362918
Gene end: 138581968
  
Corresponding Affymetrix probe sets: 10548940 (MoGene1.0st)   1455754_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000124862
Ensembl peptide - ENSMUSP00000124762
Ensembl peptide - ENSMUSP00000125335
Ensembl peptide - ENSMUSP00000145048
Ensembl peptide - ENSMUSP00000125589
Ensembl peptide - ENSMUSP00000124105
Ensembl peptide - ENSMUSP00000124514
Ensembl peptide - ENSMUSP00000124722
NCBI entrez gene - 109593     See in Manteia.
MGI - MGI:102810
RefSeq - XM_017321313
RefSeq - NM_207222
RefSeq - XM_006505339
RefSeq - XM_006505340
RefSeq - XM_006505341
RefSeq - XM_006505342
RefSeq - XM_006505344
RefSeq - XM_011241131
RefSeq - XM_011241132
RefSeq - XM_011241133
RefSeq - NM_001356305
RefSeq - NM_001356307
RefSeq Peptide - NP_997105
RefSeq Peptide - NP_001343234
RefSeq Peptide - NP_001343235
RefSeq Peptide - NP_001343236
swissprot - E0CXD7
swissprot - Q8BZL8
swissprot - E0CYK7
swissprot - E0CY33
swissprot - E9PWI9
Ensembl - ENSMUSG00000030226
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmo3ENSDARG00000008720Danio rerio
 LMO3ENSGALG00000036358Gallus gallus
 LMO3ENSG00000048540Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Lmo1 / Q924W9 / Rhombotin-1 / P25800* / LIM domain only 1*ENSMUSG0000003611190
Lmo2 / P25801 / Rhombotin-2 / P25791* / LIM domain only 2*ENSMUSG0000003269852
Lmo4 / P61969 / LIM domain transcription factor LMO4 / P61968* / LIM domain only 4*ENSMUSG0000002826647
Lhx9 / Q9WUH2 / LIM/homeobox protein Lhx9 / Q9NQ69* / LIM homeobox 9*ENSMUSG0000001923041
Lhx2 / Q9Z0S2 / LIM/homeobox protein Lhx2 / P50458* / LIM homeobox 2*ENSMUSG0000000024741
Lhx4 / P53776 / LIM/homeobox protein Lhx4 / Q969G2* / LIM homeobox 4*ENSMUSG0000002646839
Lhx3 / P50481 / LIM homeobox protein 3 / Q9UBR4* / LIM homeobox 3*ENSMUSG0000002693439
Lmx1a / Q9JKU8 / LIM homeobox transcription factor 1-alpha / Q8TE12*ENSMUSG0000002668638
Isl2 / Q9CXV0 / Insulin enhancer protein ISL-2 / Q96A47* / ISL LIM homeobox 2*ENSMUSG0000003231837
Lmx1b / LIM homeobox transcription factor 1 beta / O60663*ENSMUSG0000003876537
Lhx6 / Q9R1R0 / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA. / Q9UPM6* / LIM homeobox 6*ENSMUSG0000002689036
Lhx8 / O35652 / LIM/homeobox protein Lhx8 / Q68G74* / LIM homeobox 8*ENSMUSG0000009622534
Isl1 / P61372 / Insulin enhancer protein ISL-1 / P61371* / ISL LIM homeobox 1*ENSMUSG0000004225834
Lhx1 / P63006 / LIM/homeobox protein Lhx1 / P48742* / LIM homeobox 1*ENSMUSG0000001869832
Lhx5 / P61375 / LIM homeobox protein 5 / Q9H2C1* / LIM homeobox 5*ENSMUSG0000002959531


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0035360 positive regulation of peroxisome proliferator activated receptor signaling pathway IEA
 biological_processGO:0070373 negative regulation of ERK1 and ERK2 cascade IEA
 biological_processGO:2000324 positive regulation of glucocorticoid receptor signaling pathway IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002082 postnatal lethality "premature death anytime after postnatal day 1 to weaning age (3 weeks)" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Krastm4Tyj/Kras+,Tg(Mx1-cre)1Cgn/0
Genetic Background: involves: 129S4/SvJae * BALB/c * C57BL/6 * CBA

Allelic Composition: Lmo1tm1Thr/Lmo1tm1Thr,Lmo3tm2Thr/Lmo3tm2Thr
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Lmo1tm2Thr/Lmo1tm2Thr,Lmo3tm1Thr/Lmo3tm1Thr
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Lmo1tm2Thr/Lmo1tm2Thr,Lmo3tm2Thr/Lmo3tm2Thr
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Lmo1tm2Thr/Lmo1tm2Thr,Lmo3tm2Thr/Lmo3tm2Thr
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Lmo3tm2Thr/Lmo3tm2Thr
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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