ENSGALG00000006252


Gallus gallus

Features
Gene ID: ENSGALG00000006252
  
Biological name :LMO4
  
Synonyms : LIM domain only 4 / LMO4
  
Possible biological names infered from orthology : LIM domain transcription factor LMO4 / P61968 / P61969
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 15787883
Gene end: 15801555
  
Corresponding Affymetrix probe sets: Gga.14870.1.S1_at (Chicken Array)   Gga.2310.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000032692
NCBI entrez gene - 373901     See in Manteia.
RefSeq - NM_204112
RefSeq Peptide - NP_989443
swissprot - Q8JH76
Ensembl - ENSGALG00000006252
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmo4bENSDARG00000054749Danio rerio
 LMO4ENSG00000143013Homo sapiens
 Lmo4ENSMUSG00000028266Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000003567943
LMO3 / LIM domain only 3 / Q8BZL8* / Q8TAP4* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSGALG0000003635841
LMX1A / LIM homeobox transcription factor 1 alpha / Q8TE12* / Q9JKU8*ENSGALG0000000342441
LMX1B / P53413 / LIM/homeobox protein LMX-1.2 / O60663* / LIM homeobox transcription factor 1 beta*ENSGALG0000004058238
LMO2 / LIM domain only 2 / P25791* / P25801* / Rhombotin-2 *ENSGALG0000002989236
LHX9 / LIM/homeobox protein Lhx9 / Q9NQ69* / Q9WUH2* / LIM homeobox 9*ENSGALG0000000222336
LHX2 / LIM/homeobox protein Lhx2 ENSGALG0000000112436
LHX3 / LIM/homeobox protein Lhx3 / Q9UBR4* / P50481* / LIM homeobox 3* / LIM homeobox protein 3*ENSGALG0000000392836
LHX4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSGALG0000003658735
LHX6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSGALG0000000134735
ISL1 / P50211 / Insulin gene enhancer protein ISL-1 / P61372* / P61371* / ISL LIM homeobox 1* / Insulin enhancer protein ISL-1 *ENSGALG0000001488434
LHX5 / Gallus gallus LIM homeobox 5 (LHX5), mRNA. / P61375* / Q9H2C1* / LIM homeobox 5* / LIM homeobox protein 5*ENSGALG0000000830334
LHX1 / LIM/homeobox protein Lhx1 / P48742* / P63006* / LIM homeobox 1*ENSGALG0000000540934
LHX8 / LIM/homeobox protein Lhx8 / O35652* / Q68G74* / LIM homeobox 8*ENSGALG0000001136933
ISL2 / ISL LIM homeobox 2 / Q96A47* / Q9CXV0* / Insulin enhancer protein ISL-2 *ENSGALG0000003339124


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0003281 ventricular septum development IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0021514 ventral spinal cord interneuron differentiation IEA
 biological_processGO:0021522 spinal cord motor neuron differentiation IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0031333 negative regulation of protein complex assembly IEA
 biological_processGO:0033674 positive regulation of kinase activity IEA
 biological_processGO:0042659 regulation of cell fate specification IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0050865 regulation of cell activation IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0031252 cell leading edge IEA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr