ENSDARG00000110020


Danio rerio

Features
Gene ID: ENSDARG00000110020
  
Biological name :zgc:56628
  
Synonyms : zgc:56628
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 22409249
Gene end: 22415196
  
Corresponding Affymetrix probe sets: Dr.18443.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000148290
NCBI entrez gene - 393242     See in Manteia.
swissprot - Q7ZUG7
ZFIN ID - ZDB-GENE-040426-1099
Ensembl - ENSDARG00000110020
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmo4b / LIM domain only 4b / LMO4* / P61968* / P61969* / LIM domain only 4* / LIM domain transcription factor LMO4 *ENSDARG0000005474959
lmo4a / LIM domain only 4aENSDARG0000001385358
si:dkey-90l8.3ENSDARG0000010367655
lmo1 / Q8JFQ2 / LIM domain only 1ENSDARG0000003450440
lmo3 / Q503U0 / LIM domain only 3 / Q8TAP4* / Q8BZL8* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSDARG0000000872039
lhx2b / LIM homeobox 2bENSDARG0000003122232
lhx2a / LIM homeobox 2aENSDARG0000003796431
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697931
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481531
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836531
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397131
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380331
lmo2 / Q9PTJ3 / LIM domain only 2 (rhombotin-like 1) / P25791* / P25801* / Rhombotin-2 * / LIM domain only 2*ENSDARG0000009501931
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349931
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402330
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945830
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791529
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035428
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689628
lhx5 / P52889 / LIM homeobox 5 / Q9H2C1* / P61375* / LIM homeobox protein 5*ENSDARG0000005793628


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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