ENSMUSG00000040533


Mus musculus

Features
Gene ID: ENSMUSG00000040533
  
Biological name :Matn1
  
Synonyms : Cartilage matrix protein / Matn1 / P51942
  
Possible biological names infered from orthology : matrilin 1, cartilage matrix protein / P21941
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D2.2
Gene start: 130944385
Gene end: 130955475
  
Corresponding Affymetrix probe sets: 10508676 (MoGene1.0st)   1418477_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099636
NCBI entrez gene - 17180     See in Manteia.
MGI - MGI:106591
RefSeq - NM_010769
RefSeq Peptide - NP_034899
swissprot - P51942
Ensembl - ENSMUSG00000040533
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 matn1ENSDARG00000030215Danio rerio
 MATN1ENSGALG00000043185Gallus gallus
 MATN1ENSG00000162510Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Matn4 / matrilin 4 / O95460*ENSMUSG0000001699549
Matn2 / O08746 / Mus musculus matrilin 2 (Matn2), transcript variant 1, mRNA. / O00339* / matrilin 2*ENSMUSG0000002232448
Matn3 / O35701 / Matrilin-3 / O15232*ENSMUSG0000002058331
Vwa1 / Q8R2Z5 / von Willebrand factor A domain containing 1 / Q6PCB0*ENSMUSG0000004211616
Q9JJS0 / Scube2 / Signal peptide, CUB and EGF-like domain-containing protein 2 / Q9NQ36* / signal peptide, CUB domain and EGF like domain containing 2*ENSMUSG0000000727913
Q6NZL8 / Scube1 / signal peptide, CUB domain, EGF-like 1 / Q8IWY4* / signal peptide, CUB domain and EGF like domain containing 1*ENSMUSG0000001676312
Q66PY1 / Scube3 / Signal peptide, CUB and EGF-like domain-containing protein 3 / Q8IX30* / signal peptide, CUB domain and EGF like domain containing 3*ENSMUSG0000003867712
Cd93 / O89103 / Complement component C1q receptor / Q9NPY3* / CD93 molecule*ENSMUSG0000002743511
Cd248 / Q91V98 / Endosialin / Q9HCU0* / CD248 molecule*ENSMUSG0000005648110
Thbd / P15306 / thrombomodulin / P07204*ENSMUSG000000747439
Q8VCP9 / Clec14a / C-type lectin domain family 14 member A / Q86T13* / C-type lectin domain containing 14A*ENSMUSG000000459305


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002035  von Willebrand factor, type A
 IPR013032  EGF-like, conserved site
 IPR019466  Matrilin, coiled-coil trimerisation domain
 IPR030751  Matrilin-1
 IPR036337  Matrilin, coiled-coil domain superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002062 chondrocyte differentiation IMP
 biological_processGO:0003429 growth plate cartilage chondrocyte morphogenesis IMP
 biological_processGO:0030500 regulation of bone mineralization IMP
 cellular_componentGO:0005576 extracellular region IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003055 abnormal epiphyseal plate morphology "malformed or absent cartilagenous center of ossification on the long bones permitting growth of the bone in both directions during development" [MeSH:National Library of Medicine - Medical Subject Headings, 2003]
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Allelic Composition: Lhfpl5hscy/Lhfpl5hscy
Genetic Background: involves: B6(MOR)-Tmhshscy/J * CAST/Ei

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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