ENSMUSG00000061859


Mus musculus

Features
Gene ID: ENSMUSG00000061859
  
Biological name :Patj
  
Synonyms : Mus musculus PATJ, crumbs cell polarity complex component (Patj), transcript variant 5, mRNA. / Patj / Q63ZW7
  
Possible biological names infered from orthology : PATJ, crumbs cell polarity complex component / Q8NI35
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: C6
Gene start: 98395785
Gene end: 98719603
  
Corresponding Affymetrix probe sets: 10506058 (MoGene1.0st)   1418983_at (Mouse Genome 430 2.0 Array)   1418984_at (Mouse Genome 430 2.0 Array)   1440737_at (Mouse Genome 430 2.0 Array)   1442244_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000102648
Ensembl peptide - ENSMUSP00000102645
Ensembl peptide - ENSMUSP00000102649
Ensembl peptide - ENSMUSP00000116021
Ensembl peptide - ENSMUSP00000115936
Ensembl peptide - ENSMUSP00000030290
Ensembl peptide - ENSMUSP00000049176
Ensembl peptide - ENSMUSP00000099854
Ensembl peptide - ENSMUSP00000102644
NCBI entrez gene - 12695     See in Manteia.
MGI - MGI:1277960
RefSeq - XM_017319936
RefSeq - NM_007704
RefSeq - NM_172696
RefSeq - XM_006502699
RefSeq - XM_006502700
RefSeq - XM_006502701
RefSeq - XM_006502702
RefSeq - XM_006502703
RefSeq - XM_006502704
RefSeq - XM_006502705
RefSeq - XM_006502706
RefSeq - XM_006502707
RefSeq - NM_001005784
RefSeq - NM_001005787
RefSeq - NM_001355177
RefSeq Peptide - NP_001005787
RefSeq Peptide - NP_001342106
RefSeq Peptide - NP_031730
RefSeq Peptide - NP_766284
RefSeq Peptide - NP_001005784
swissprot - A2ADL9
swissprot - A2ADT1
swissprot - A2ADS8
swissprot - F6RSZ8
swissprot - A2ADS6
swissprot - Q63ZW7
Ensembl - ENSMUSG00000061859
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 patjENSDARG00000024964Danio rerio
 ENSGALG00000010934Gallus gallus
 ENSGALG00000038993Gallus gallus
 PATJENSG00000132849Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Mpdz / Q8VBX6 / multiple PDZ domain protein / O75970* / multiple PDZ domain crumbs cell polarity complex component*ENSMUSG0000002840242
Pdzd2 / PDZ domain containing 2 / O15018*ENSMUSG0000002219717
Il16 / O54824 / Pro-interleukin-16 Interleukin-16 / Q14005* / interleukin 16*ENSMUSG0000000174111
Pard3 / Q99NH2 / par-3 family cell polarity regulator / Q8TEW0*ENSMUSG0000002581211
Pard3b / Q9CSB4 / par-3 family cell polarity regulator beta / Q8TEW8*ENSMUSG000000520629
Lnx2 / Q91XL2 / Ligand of Numb protein X 2 / Q8N448*ENSMUSG000000165207
Lnx1 / O70263 / ligand of numb-protein X 1 / Q8TBB1*ENSMUSG000000292287


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR004172  L27 domain
 IPR015132  L27-2
 IPR036034  PDZ superfamily
 IPR036892  L27 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome ISO
 cellular_componentGO:0005815 microtubule organizing center ISO
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0030054 cell junction ISO
 cellular_componentGO:0045177 apical part of cell IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Tight junction interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000044279 Crb3 / Q8QZT4 / Mus musculus crumbs family member 3 (Crb3), transcript variant 2, mRNA. / Q9BUF7* / crumbs 3, cell polarity complex component*  / complex / reaction
 ENSMUSG00000021112 Mpp5 / Q9JLB2 / membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) / Q8N3R9* / membrane palmitoylated protein 5*  / complex / reaction






 

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