ENSG00000113448


Homo sapiens

Features
Gene ID: ENSG00000113448
  
Biological name :PDE4D
  
Synonyms : PDE4D / phosphodiesterase 4D / Q08499
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q12.1
Gene start: 58969038
Gene end: 60522120
  
Corresponding Affymetrix probe sets: 1554717_a_at (Human Genome U133 Plus 2.0 Array)   204491_at (Human Genome U133 Plus 2.0 Array)   210836_x_at (Human Genome U133 Plus 2.0 Array)   210837_s_at (Human Genome U133 Plus 2.0 Array)   211840_s_at (Human Genome U133 Plus 2.0 Array)   228962_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423094
Ensembl peptide - ENSP00000421829
Ensembl peptide - ENSP00000423555
Ensembl peptide - ENSP00000492052
Ensembl peptide - ENSP00000490821
Ensembl peptide - ENSP00000442734
Ensembl peptide - ENSP00000425917
Ensembl peptide - ENSP00000425910
Ensembl peptide - ENSP00000425605
Ensembl peptide - ENSP00000424852
Ensembl peptide - ENSP00000424281
Ensembl peptide - ENSP00000308485
Ensembl peptide - ENSP00000321739
Ensembl peptide - ENSP00000345502
Ensembl peptide - ENSP00000351800
Ensembl peptide - ENSP00000353152
Ensembl peptide - ENSP00000384806
Ensembl peptide - ENSP00000421013
NCBI entrez gene - 5144     See in Manteia.
OMIM - 600129
RefSeq - XM_017009571
RefSeq - NM_001197219
RefSeq - NM_001197220
RefSeq - NM_001197221
RefSeq - NM_001197222
RefSeq - NM_001197223
RefSeq - NM_001349241
RefSeq - NM_001349242
RefSeq - NM_006203
RefSeq - XM_005248537
RefSeq - XM_005248538
RefSeq - XM_011543469
RefSeq - XM_011543470
RefSeq - XM_011543471
RefSeq - XM_011543473
RefSeq - XM_011543477
RefSeq - XM_017009565
RefSeq - XM_017009566
RefSeq - XM_017009567
RefSeq - XM_017009568
RefSeq - XM_017009569
RefSeq - XM_017009570
RefSeq - NM_001104631
RefSeq - NM_001165899
RefSeq - NM_001197218
RefSeq Peptide - NP_001159371
RefSeq Peptide - NP_001184147
RefSeq Peptide - NP_001184148
RefSeq Peptide - NP_001184149
RefSeq Peptide - NP_001184150
RefSeq Peptide - NP_001184151
RefSeq Peptide - NP_001184152
RefSeq Peptide - NP_001336170
RefSeq Peptide - NP_001336171
RefSeq Peptide - NP_006194
RefSeq Peptide - NP_001098101
swissprot - D6RHE0
swissprot - D6RBB2
swissprot - D6RAQ0
swissprot - D6R9L4
swissprot - A0A1W2PQN6
swissprot - A0A1B0GW84
swissprot - A0A140VJR0
swissprot - Q08499
swissprot - A0A087WSZ7
swissprot - D6RIG1
Ensembl - ENSG00000113448
  
Related genetic diseases (OMIM): 606799 - {Stroke, susceptibility to, 1}, 606799
  614613 - Acrodysostosis 2, with or without hormone resistance, 614613
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pde4dENSDARG00000032761Danio rerio
 PDE4DENSGALG00000014727Gallus gallus
 Pde4dENSMUSG00000021699Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDE4B / Q07343 / phosphodiesterase 4BENSG0000018458864
PDE4A / P27815 / phosphodiesterase 4AENSG0000006598963
Q08493 / AC008397.2 / cAMP-specific 3,5-cyclic phosphodiesterase 4C ENSG0000028518859
PDE4C / Q08493 / phosphodiesterase 4CENSG0000010565059
PDE1C / Q14123 / phosphodiesterase 1CENSG0000015467822
PDE8A / O60658 / phosphodiesterase 8AENSG0000007341721
PDE1A / P54750 / phosphodiesterase 1AENSG0000011525220
PDE8B / O95263 / phosphodiesterase 8BENSG0000011323120
PDE1B / Q01064 / phosphodiesterase 1BENSG0000012336019
AC022414.1 / high affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B isoform 11 ENSG0000028476218
PDE7A / Q13946 / phosphodiesterase 7AENSG0000020526818
PDE7B / Q9NP56 / phosphodiesterase 7BENSG0000017140817


Protein motifs (from Interpro)
Interpro ID Name
 IPR002073  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain
 IPR003607  HD/PDEase domain
 IPR023088  3"5"-cyclic nucleotide phosphodiesterase
 IPR023174  3"5"-cyclic nucleotide phosphodiesterase, conserved site
 IPR036971  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002027 regulation of heart rate ISS
 biological_processGO:0006198 cAMP catabolic process IGI
 biological_processGO:0006939 smooth muscle contraction IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway TAS
 biological_processGO:0007568 aging IEA
 biological_processGO:0010469 regulation of signaling receptor activity ISS
 biological_processGO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum ISS
 biological_processGO:0019933 cAMP-mediated signaling NAS
 biological_processGO:0030593 neutrophil chemotaxis IEA
 biological_processGO:0030814 obsolete regulation of cAMP metabolic process IEA
 biological_processGO:0032729 positive regulation of interferon-gamma production IMP
 biological_processGO:0032743 positive regulation of interleukin-2 production IMP
 biological_processGO:0032754 positive regulation of interleukin-5 production IMP
 biological_processGO:0033137 negative regulation of peptidyl-serine phosphorylation ISS
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0045822 negative regulation of heart contraction ISS
 biological_processGO:0050852 T cell receptor signaling pathway IMP
 biological_processGO:0050900 leukocyte migration IEA
 biological_processGO:0060314 regulation of ryanodine-sensitive calcium-release channel activity ISS
 biological_processGO:0061028 establishment of endothelial barrier ISS
 biological_processGO:0071222 cellular response to lipopolysaccharide IEA
 biological_processGO:0071872 cellular response to epinephrine stimulus IEA
 biological_processGO:0071875 adrenergic receptor signaling pathway ISS
 biological_processGO:0086004 regulation of cardiac muscle cell contraction ISS
 biological_processGO:0086024 adenylate cyclase-activating adrenergic receptor signaling pathway involved in positive regulation of heart rate IC
 biological_processGO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction IC
 biological_processGO:1901898 negative regulation of relaxation of cardiac muscle ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005891 voltage-gated calcium channel complex ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0031965 nuclear membrane IDA
 cellular_componentGO:0034704 calcium channel complex IDA
 molecular_functionGO:0004114 3",5"-cyclic-nucleotide phosphodiesterase activity IEA
 molecular_functionGO:0004115 3",5"-cyclic-AMP phosphodiesterase activity IGI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0008144 drug binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019899 enzyme binding ISS
 molecular_functionGO:0030552 cAMP binding IDA
 molecular_functionGO:0031698 beta-2 adrenergic receptor binding ISS
 molecular_functionGO:0044325 ion channel binding ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051117 ATPase binding IPI
 molecular_functionGO:0097110 scaffold protein binding IPI


Pathways (from Reactome)
Pathway description
DARPP-32 events
G alpha (s) signalling events


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000055 Abnormality of female external genitalia 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000457 Flat nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000635 Blue irides 
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000750 Impaired language development 
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 HP:0000752 Hyperactivity 
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 HP:0000819 Diabetes mellitus 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000851 Congenital hypothyroidism 
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 HP:0000852 Pseudohypoparathyroidism 
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 HP:0000858 Menstrual irregularities 
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001831 Brachydactyly (feet) 
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 HP:0002286 Light colored hair 
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 HP:0002297 Red hair 
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 HP:0002516 Increased intracranial pressure 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
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 HP:0002905 Hyperphosphatemia 
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 HP:0002983 Micromelia 
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003165 Elevated serum parathyroid hormone (PTH) level 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003416 Spinal canal stenosis 
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 HP:0003502 Mild short stature "A mild degree of short stature." [HPO:curators]
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 HP:0003528 Elevated calcitonin 
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004646 Nasal bone hypoplasia 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005305 Cerebral venous thrombosis 
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 HP:0005453 Absent/hypoplastic paranasal sinuses 
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0008450 Narrow vertebral interpedicular distance "A narrowing of the distance between vertebral pedicles, which are the two short, thick processes, which project backward, one on either side, from the upper part of the verterbral body, at the junction of its posterior and lateral surfaces." [HPO:curators]
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 HP:0008479 Hypoplastic vertebral bodies 
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 HP:0008497 Congenital craniofacial dysostosis 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0010655 Stippling of the epiphyses "The presence of abnormal punctate (speckled, dot-like) calcifications in the epiphyses (FMA:24012)." [HPO:curators]
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 HP:0010743 Hypoplasia of the metatarsal bones 
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 HP:0010807 Open bite "Visible space between the dental arches in occlusion." [pmid:19125428]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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