ENSG00000134086


Homo sapiens

Features
Gene ID: ENSG00000134086
  
Biological name :VHL
  
Synonyms : P40337 / VHL / von Hippel-Lindau tumor suppressor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p25.3
Gene start: 10141008
Gene end: 10152220
  
Corresponding Affymetrix probe sets: 1559227_s_at (Human Genome U133 Plus 2.0 Array)   203844_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000256474
Ensembl peptide - ENSP00000344757
NCBI entrez gene - 7428     See in Manteia.
OMIM - 608537
RefSeq - NM_198156
RefSeq - NM_000551
RefSeq Peptide - NP_000542
RefSeq Peptide - NP_937799
swissprot - P40337
swissprot - A0A0S2Z4K1
swissprot - A0A024R2F2
Ensembl - ENSG00000134086
  
Related genetic diseases (OMIM): 263400 - Erythrocytosis, familial, 2, 263400
  608537 - Hemangioblastoma, cerebellar, somatic
  171300 - Pheochromocytoma, 171300
  144700 - Renal cell carcinoma, somatic, 144700
  193300 - von Hippel-Lindau syndrome, 193300
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vhlENSDARG00000070617Danio rerio
 ENSGALG00000028009Gallus gallus
 VhlENSMUSG00000033933Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VHLL / Q6RSH7 / VHL likeENSG0000018903043


Protein motifs (from Interpro)
Interpro ID Name
 IPR002714  von Hippel-Lindau tumour suppressor protein
 IPR022772  von Hippel-Lindau disease tumour suppressor, beta/alpha domain
 IPR024048  von Hippel-Lindau disease tumour suppressor, alpha domain
 IPR024053  von Hippel-Lindau disease tumour suppressor, beta domain
 IPR036208  VHL superfamily
 IPR037139  von Hippel-Lindau disease tumour suppressor, alpha domain superfamily
 IPR037140  von Hippel-Lindau disease tumour suppressor, beta domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0000902 cell morphogenesis NAS
 biological_processGO:0006355 regulation of transcription, DNA-templated IMP
 biological_processGO:0006508 proteolysis TAS
 biological_processGO:0008285 negative regulation of cell proliferation IMP
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0016567 protein ubiquitination IDA
 biological_processGO:0043066 negative regulation of apoptotic process NAS
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0045597 positive regulation of cell differentiation NAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IMP
 biological_processGO:0050821 protein stabilization NAS
 biological_processGO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia TAS
 biological_processGO:0061428 negative regulation of transcription from RNA polymerase II promoter in response to hypoxia IDA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion NAS
 cellular_componentGO:0005783 endoplasmic reticulum NAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030891 VCB complex IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA


Pathways (from Reactome)
Pathway description
Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
SUMOylation of ubiquitinylation proteins
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000093 Proteinuria 
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 HP:0000096 Glomerulosclerosis 
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 HP:0000113 Polycystic kidney 
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 HP:0000238 Hydrocephalus 
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 HP:0000360 Tinnitus "Tinnitus is an auditory perception that can be described as the experience of sound, in the ear or in the head, in the absence of external acoustic stimulation." [Cochrane:ab005233]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000526 Aniridia "Congenital absence of the iris." [HPO:curators]
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 HP:0000541 Detached retina 
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 HP:0000572 Visual loss 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000740 Anxiety (with pheochromocytoma) 
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000875 Episodic hypertension 
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 HP:0000957 Cafe-au-lait spots 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000980 Pallor 
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 HP:0001028 Hemangiomas "The presence of multiple hemangiomas. A hemangioma is a benign tumor characterized by blood-filled spaces lined by benign endothelial cells. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma (in contrast to a hemangioma with small endothelial spaces, which is called capillary hemangioma)." [HPO:curators]
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 HP:0001050 Plethora 
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 HP:0001069 Hyperhidrosis, episodic 
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 HP:0001095 Hypertensive retinopathy 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001293 Cranial nerve compression 
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 HP:0001297 Stroke 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001342 Cerebral hemorrhage "A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001605 Vocal cord paralysis 
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 HP:0001618 Dysphonia 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001649 Tachycardia "A rapid heartrate that exceeds the range of the normal resting heartrate for age." [HPO:curators]
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 HP:0001737 Pancreatic cysts 
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 HP:0001824 Weight loss 
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 HP:0001898 Increased red blood cell mass 
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 HP:0001899 Increased hematocrit 
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 HP:0001900 Increased hemoglobin 
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 HP:0001901 Erythrocytosis 
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 HP:0001920 Renal artery stenosis 
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 HP:0001962 Palpitations 
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 HP:0002017 Nausea and vomiting 
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 HP:0002018 Nausea 
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 HP:0002076 Migraine 
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 HP:0002167 Neurological speech impairment 
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002331 Headache (with pheochromocytoma) 
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 HP:0002516 Increased intracranial pressure 
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 HP:0002574 Episodic abdominal pain 
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 HP:0002615 Hypotension 
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 HP:0002619 Varicose veins 
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 HP:0002641 Peripheral thrombosis 
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002666 Pheochromocytoma "Pheochromocytomas (also known as chromaffin tumors) produce, store, and secrete catecholamines. Pheochromocytomas usually originate from the adrenal medulla but may also develop from chromaffin cells in or about sympathetic ganglia. A common symptom of pheochromocytoma is hypertension owing to release of catecholamines." [HPO:curators]
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 HP:0002668 Paragangliomas "A carotid body tumor (also called paraganglionoma or chemodectoma) is a tumor found in the upper neck at the branching of the carotid artery. They arise from the chemoreceptor organ (paraganglion) located in the adventitia of the carotid artery bifurcation." [HPO:curators]
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 HP:0002864 Paragangliomas, head and neck 
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 HP:0002894 Pancreatic cancer 
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 HP:0003072 Hypercalcemia "A level of blood calcium that is higher than normal." [HPO:curators]
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 HP:0003345 Elevated urinary norepinephrine 
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 HP:0003528 Elevated calcitonin 
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 HP:0003574 Positive regitine test 
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 HP:0003639 Increased urinary epinephrine 
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 HP:0003745 Sporadic 
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 HP:0003812 Phenotypic variability 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0005306 Capillary hemangiomas "The presence of a capillary hemangiomas, which are hemangiomas with small endothelial spaces." [HPO:curators]
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 HP:0005562 Multiple renal cysts 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0005954 Pulmonary capillary hemangiomatosis 
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 HP:0006737 Pheochromocytoma, extraadrenal "Pheochromocytoma not originating from the adrenal medulla but from another source such as from chromaffin cells in or about sympathetic ganglia." [HPO:curators]
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 HP:0006748 Pheochromocytoma, adrenal "Pheochromocytoma originating from the adrenal medulla." [HPO:curators]
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 HP:0006880 Cerebellar hemangioblastoma 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008629 Pulsatile tinnitus "Pulsatile tinnitus is generally classified a kind of objective tinnitus, meaning that it is not only audible to the patient but also to the examiner on auscultation of the auditory canal and/or of surrounding structures with use of an auscultation tube or stethoscope. Usually, pulsatile tinnitus is heard as a lower pitched thumping or booming, a rougher blowing sound which is coincidental with respiration, or as a clicking, higher pitched rhythmic sensation. Pulsatile tinnitus may be associated with vascular abnormalities such as arterioevenous shunts or glomus tumors or the jugular vein, arterial bruits related to a high-riding carotid artery (close to the auditory areas) or carotid stenosis, or venous abnormalities such as a dehiscent jugular bulb or to hypertension. Finally, in some patients, mechanical abnormalities such a spatulous eustachian tubes, palatomyoclonus (small spasms of muscles in the soft palate area), or idiopathic stapedial muscle spasm may represent the underlying cause of pulsatile tinnitus." [HPO:curators]
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 HP:0009711 Retinal hemangioblastoma "Retinal hemangioblastoma is a benign vascular tumor of the retina without any neoplastic characteristics. They have been called "retinal angiomas" and "retinal hemangiomas" but hemangioblastoma is the preferred term since they are histologically identical to lesions found in the CNS." [HPO:curators]
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 HP:0009713 Spinal hemangioblastoma "Presence of a hemangioblastoma, a benign vascular tumor, in the spinal cord." [HPO:curators]
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 HP:0009715 Papillary cystadenoma of the epididymis "Papillary cystadenomas of the epididymis are partially or completely cystic or solid lesions, between 1-3 cm in diameter and arise from the efferent duct epithelium of the head of epididymis." [HPO:curators]
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 HP:0010532 Paroxysmal vertigo "Paroxysmal episodes of vertigo." [HPO:curators]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011703 Sinus tachycardia "Inappropriate sinus tachycardia is a nonparoxysmal tachyarrhythmia characterized by an increased resting heart rate (HR) and/or an exaggerated HR response to minimal exertion or a change in body posture. HR is constantly above the physiological range with no appropriate relation to metabolic or physiological demands." [HPO:probinson, pmid:15763524]
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 HP:0011979 Elevated urinary dopamine "An increased concentration of `dopamine` (CHEBI:18243) in the `urine` (FMA:12274)." [HPO:probinson]
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 HP:0012222 Arachnoid hemangiomatosis "The presence of multiple hemangiomas in the arachnoid." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0025269 Panic attack "A sudden episode of intense fear in a situation in which there is no danger or apparent cause. The panic attack is accompanied by symptoms such as palpitations, sweating and chills or hot flushes. There may be a sensation of dyspnea (being out of breath), chest pain, or abdominal distress. Some indiviudals with panic attacks may experience depersonalization, a fear of going crazy, or a fear of dying." []
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 HP:0030424 Epididymal cyst "A smooth, extratesticular, spherical cyst in the head of the epididymis." [HPO:probinson, pmid:14767330]
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 HP:0031284 Flushing "Recurrent episodes of redness of the skin together with a sensation of warmth or burning of the affected areas of skin." []
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 HP:0100026 Arteriovenous malformations 
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100659 Abnormality of the cerebral vasculature 
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 HP:0100749 Chest pain 
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 HP:0100761 Visceral angiomatosis 
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 HP:0100763 Abnormality of the lymphatic system 
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 HP:0100799 Neoplasia of the middle ear 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100387 RBX1 / P62877 / ring-box 1  / complex
 ENSG00000124440 HIF3A / Q9Y2N7 / hypoxia inducible factor 3 alpha subunit  / complex / reaction
 ENSG00000131508 P62837 / UBE2D2 / ubiquitin conjugating enzyme E2 D2  / reaction
 ENSG00000103363 ELOB / Q15370 / elongin B  / complex
 ENSG00000108094 CUL2 / Q13617 / cullin 2  / complex
 ENSG00000154582 ELOC / Q15369 / elongin C  / complex
 ENSG00000116016 EPAS1 / Q99814 / endothelial PAS domain protein 1  / complex / reaction
 ENSG00000100644 HIF1A / Q16665 / hypoxia inducible factor 1 alpha subunit  / complex / reaction
 ENSG00000129521 EGLN3 / Q9H6Z9 / egl-9 family hypoxia inducible factor 3  / complex
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / reaction / complex
 ENSG00000144791 LIMD1 / Q9UGP4 / LIM domains containing 1  / complex
 ENSG00000135766 EGLN1 / Q9GZT9 / egl-9 family hypoxia inducible factor 1  / complex
 ENSG00000109332 P61077 / UBE2D3 / ubiquitin conjugating enzyme E2 D3  / reaction
 ENSG00000072401 P51668 / UBE2D1 / ubiquitin conjugating enzyme E2 D1  / reaction






 

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