ENSG00000146833


Homo sapiens

Features
Gene ID: ENSG00000146833
  
Biological name :TRIM4
  
Synonyms : Q9C037 / TRIM4 / tripartite motif containing 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q22.1
Gene start: 99876958
Gene end: 99919600
  
Corresponding Affymetrix probe sets: 1554287_at (Human Genome U133 Plus 2.0 Array)   223384_s_at (Human Genome U133 Plus 2.0 Array)   224159_x_at (Human Genome U133 Plus 2.0 Array)   230173_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000348216
Ensembl peptide - ENSP00000346186
Ensembl peptide - ENSP00000396229
Ensembl peptide - ENSP00000275736
NCBI entrez gene - 89122     See in Manteia.
RefSeq - NM_033017
RefSeq - NM_033091
RefSeq Peptide - NP_148977
RefSeq Peptide - NP_149082
swissprot - Q9C037
swissprot - H7C0Q6
Ensembl - ENSG00000146833
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96F44 / TRIM11 / tripartite motif containing 11ENSG0000015437036
Q9Y577 / TRIM17 / tripartite motif containing 17ENSG0000016293135
Q8NG06 / TRIM58 / tripartite motif containing 58ENSG0000016272234
P19474 / TRIM21 / tripartite motif containing 21ENSG0000013210934
Q9HCM9 / TRIM39 / tripartite motif containing 39ENSG0000020459933
O00635 / TRIM38 / tripartite motif containing 38ENSG0000011234331
TRIM6 / Q9C030 / tripartite motif containing 6ENSG0000012123631
Q6AZZ1 / TRIM68 / tripartite motif containing 68ENSG0000016733331
Q495X7 / TRIM60 / tripartite motif containing 60ENSG0000017697930
TRIM6-TRIM34 / TRIM6-TRIM34 readthroughENSG0000025858830
A6NK02 / TRIM75P / tripartite motif containing 75, pseudogeneENSG0000025037429
Q9BYJ4 / TRIM34 / tripartite motif containing 34ENSG0000025865928
TRIM5 / Q9C035 / tripartite motif containing 5ENSG0000013225627
TRIM39-RPP21 / TRIM39-RPP21 readthroughENSG0000024816727
Q8IYM9 / TRIM22 / tripartite motif containing 22ENSG0000013227427


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR035829  TRIM4, PRY/SPRY domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0070206 protein trimerization IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr