ENSG00000162931


Homo sapiens

Features
Gene ID: ENSG00000162931
  
Biological name :TRIM17
  
Synonyms : Q9Y577 / TRIM17 / tripartite motif containing 17
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q42.13
Gene start: 228407940
Gene end: 228416861
  
Corresponding Affymetrix probe sets: 220279_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000397688
Ensembl peptide - ENSP00000355659
Ensembl peptide - ENSP00000403312
Ensembl peptide - ENSP00000430468
Ensembl peptide - ENSP00000429555
Ensembl peptide - ENSP00000295033
Ensembl peptide - ENSP00000347794
Ensembl peptide - ENSP00000355658
NCBI entrez gene - 51127     See in Manteia.
OMIM - 606123
RefSeq - XM_017001419
RefSeq - NM_001024940
RefSeq - NM_001134855
RefSeq - NM_016102
RefSeq - XM_006711779
RefSeq - XM_011544209
RefSeq - XM_011544210
RefSeq - XM_011544211
RefSeq - XM_017001418
RefSeq Peptide - NP_001128327
RefSeq Peptide - NP_057186
RefSeq Peptide - NP_001020111
swissprot - J3KNZ3
swissprot - J3KQG0
swissprot - A0A024R3T1
swissprot - Q9Y577
swissprot - E5RJW6
swissprot - E5RI62
Ensembl - ENSG00000162931
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7TPM3ENSMUSG00000036964Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96F44 / TRIM11 / tripartite motif containing 11ENSG0000015437046
Q9HCM9 / TRIM39 / tripartite motif containing 39ENSG0000020459937
Q8NG06 / TRIM58 / tripartite motif containing 58ENSG0000016272236
P19474 / TRIM21 / tripartite motif containing 21ENSG0000013210936
TRIM4 / Q9C037 / tripartite motif containing 4ENSG0000014683336
Q6AZZ1 / TRIM68 / tripartite motif containing 68ENSG0000016733334
O00635 / TRIM38 / tripartite motif containing 38ENSG0000011234332
TRIM6-TRIM34 / TRIM6-TRIM34 readthroughENSG0000025858831
Q495X7 / TRIM60 / tripartite motif containing 60ENSG0000017697931
TRIM6 / Q9C030 / tripartite motif containing 6ENSG0000012123631
TRIM39-RPP21 / TRIM39-RPP21 readthroughENSG0000024816730
Q9BYJ4 / TRIM34 / tripartite motif containing 34ENSG0000025865929
A6NK02 / TRIM75P / tripartite motif containing 75, pseudogeneENSG0000025037429
TRIM5 / Q9C035 / tripartite motif containing 5ENSG0000013225628
Q8IYM9 / TRIM22 / tripartite motif containing 22ENSG0000013227428


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR032918  E3 ubiquitin-protein ligase TRIM17
 IPR035687  TRIM17, PRY/SPRY domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032880 regulation of protein localization IMP
 biological_processGO:0051865 protein autoubiquitination IDA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030674 protein binding, bridging IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Interferon gamma signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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