ENSG00000204599


Homo sapiens

Features
Gene ID: ENSG00000204599
  
Biological name :TRIM39
  
Synonyms : Q9HCM9 / TRIM39 / tripartite motif containing 39
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p22.1
Gene start: 30326479
Gene end: 30343729
  
Corresponding Affymetrix probe sets: 222732_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000379796
Ensembl peptide - ENSP00000406019
Ensembl peptide - ENSP00000405928
Ensembl peptide - ENSP00000405498
Ensembl peptide - ENSP00000397952
Ensembl peptide - ENSP00000394768
Ensembl peptide - ENSP00000388224
Ensembl peptide - ENSP00000379800
Ensembl peptide - ENSP00000379797
Ensembl peptide - ENSP00000365844
Ensembl peptide - ENSP00000365847
NCBI entrez gene - 56658     See in Manteia.
OMIM - 605700
RefSeq - NM_021253
RefSeq - NM_172016
RefSeq Peptide - NP_067076
RefSeq Peptide - NP_742013
swissprot - A0A024RCR1
swissprot - A0A024RCP5
swissprot - H0Y735
swissprot - A2AAZ6
swissprot - Q9HCM9
swissprot - A2AAZ5
swissprot - A2AAZ4
swissprot - A2AAZ3
swissprot - A2AAZ2
Ensembl - ENSG00000204599
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038146Gallus gallus
 Trim39ENSMUSG00000045409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM39-RPP21 / TRIM39-RPP21 readthroughENSG0000024816775
Q495X7 / TRIM60 / tripartite motif containing 60ENSG0000017697940
Q96F44 / TRIM11 / tripartite motif containing 11ENSG0000015437039
A6NK02 / TRIM75P / tripartite motif containing 75, pseudogeneENSG0000025037439
P19474 / TRIM21 / tripartite motif containing 21ENSG0000013210938
Q8NG06 / TRIM58 / tripartite motif containing 58ENSG0000016272236
O00635 / TRIM38 / tripartite motif containing 38ENSG0000011234336
Q6AZZ1 / TRIM68 / tripartite motif containing 68ENSG0000016733335
Q9Y577 / TRIM17 / tripartite motif containing 17ENSG0000016293134
TRIM6 / Q9C030 / tripartite motif containing 6ENSG0000012123632
TRIM4 / Q9C037 / tripartite motif containing 4ENSG0000014683332
TRIM6-TRIM34 / TRIM6-TRIM34 readthroughENSG0000025858831
Q9BYJ4 / TRIM34 / tripartite motif containing 34ENSG0000025865929
TRIM5 / Q9C035 / tripartite motif containing 5ENSG0000013225628
Q8IYM9 / TRIM22 / tripartite motif containing 22ENSG0000013227428


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR035033  TRIM39, PRY/SPRY domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IDA
 biological_processGO:2001235 positive regulation of apoptotic signaling pathway IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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