ENSG00000248167


Homo sapiens

Features
Gene ID: ENSG00000248167
  
Biological name :TRIM39-RPP21
  
Synonyms : TRIM39-RPP21 / TRIM39-RPP21 readthrough
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p22.1
Gene start: 30328907
Gene end: 30346854
  
Corresponding Affymetrix probe sets: 218836_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485378
NCBI entrez gene - 202658     See in Manteia.
RefSeq - NM_001199119
RefSeq Peptide - NP_001186048
swissprot - A0A096LP39
Ensembl - ENSG00000248167
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038146Gallus gallus
 Trim39ENSMUSG00000045409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9HCM9 / TRIM39 / tripartite motif containing 39ENSG0000020459978
Q96F44 / TRIM11 / tripartite motif containing 11ENSG0000015437033
Q495X7 / TRIM60 / tripartite motif containing 60ENSG0000017697932
A6NK02 / TRIM75P / tripartite motif containing 75, pseudogeneENSG0000025037432
P19474 / TRIM21 / tripartite motif containing 21ENSG0000013210930
O00635 / TRIM38 / tripartite motif containing 38ENSG0000011234329
Q9Y577 / TRIM17 / tripartite motif containing 17ENSG0000016293129
Q8NG06 / TRIM58 / tripartite motif containing 58ENSG0000016272229
Q6AZZ1 / TRIM68 / tripartite motif containing 68ENSG0000016733327
TRIM4 / Q9C037 / tripartite motif containing 4ENSG0000014683327
TRIM6 / Q9C030 / tripartite motif containing 6ENSG0000012123625
TRIM6-TRIM34 / TRIM6-TRIM34 readthroughENSG0000025858824
Q8IYM9 / TRIM22 / tripartite motif containing 22ENSG0000013227423
Q9BYJ4 / TRIM34 / tripartite motif containing 34ENSG0000025865922
TRIM5 / Q9C035 / tripartite motif containing 5ENSG0000013225622


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR007175  RNAse P, Rpr2/Rpp21 subunit
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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