ENSG00000164120


Homo sapiens

Features
Gene ID: ENSG00000164120
  
Biological name :HPGD
  
Synonyms : 15-hydroxyprostaglandin dehydrogenase / HPGD / P15428
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q34.1
Gene start: 174490177
Gene end: 174523154
  
Corresponding Affymetrix probe sets: 203913_s_at (Human Genome U133 Plus 2.0 Array)   203914_x_at (Human Genome U133 Plus 2.0 Array)   211548_s_at (Human Genome U133 Plus 2.0 Array)   211549_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000422418
Ensembl peptide - ENSP00000443644
Ensembl peptide - ENSP00000438017
Ensembl peptide - ENSP00000427699
Ensembl peptide - ENSP00000425741
Ensembl peptide - ENSP00000423110
Ensembl peptide - ENSP00000423066
Ensembl peptide - ENSP00000296521
Ensembl peptide - ENSP00000296522
Ensembl peptide - ENSP00000398720
Ensembl peptide - ENSP00000420892
NCBI entrez gene - 3248     See in Manteia.
OMIM - 601688
RefSeq - XM_011531907
RefSeq - NM_000860
RefSeq - NM_001145816
RefSeq - NM_001256301
RefSeq - NM_001256305
RefSeq - NM_001256306
RefSeq - NM_001256307
RefSeq Peptide - NP_001243235
RefSeq Peptide - NP_001243236
RefSeq Peptide - NP_000851
RefSeq Peptide - NP_001139288
RefSeq Peptide - NP_001243230
RefSeq Peptide - NP_001243234
swissprot - D6RHF8
swissprot - D6RA83
swissprot - P15428
swissprot - E9PD69
swissprot - D6RA66
swissprot - E9PBZ2
Ensembl - ENSG00000164120
  
Related genetic diseases (OMIM): 119900 - Digital clubbing, isolated congenital, 119900
  259100 - Cranioosteoarthropathy, 259100
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hpgdENSDARG00000012016Danio rerio
 HPGDENSGALG00000010769Gallus gallus
 HpgdENSMUSG00000031613Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q99714 / HSD17B10 / hydroxysteroid 17-beta dehydrogenase 10ENSG0000007250628
Q9BPX1 / HSD17B14 / hydroxysteroid 17-beta dehydrogenase 14ENSG0000008707627
Q92506 / HSD17B8 / hydroxysteroid 17-beta dehydrogenase 8ENSG0000020422827
BDH2 / Q9BUT1 / 3-hydroxybutyrate dehydrogenase 2ENSG0000016403927
DHRS4 / Q9BTZ2 / dehydrogenase/reductase 4ENSG0000015732626
CBR4 / Q8N4T8 / carbonyl reductase 4ENSG0000014543926
DHRS2 / Q13268 / dehydrogenase/reductase 2ENSG0000010086724
DCXR / Q7Z4W1 / dicarbonyl and L-xylulose reductaseENSG0000016973821
Q6PKH6 / DHRS4L2 / dehydrogenase/reductase 4 like 2ENSG0000018763020


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR020904  Short-chain dehydrogenase/reductase, conserved site
 IPR036291  NAD(P)-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006631 fatty acid metabolic process IEA
 biological_processGO:0006693 prostaglandin metabolic process IEA
 biological_processGO:0007179 transforming growth factor beta receptor signaling pathway IDA
 biological_processGO:0007565 female pregnancy IDA
 biological_processGO:0007567 parturition IDA
 biological_processGO:0019372 lipoxygenase pathway TAS
 biological_processGO:0030728 ovulation ISS
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0045786 negative regulation of cell cycle IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0070493 thrombin-activated receptor signaling pathway ISS
 biological_processGO:0097070 ductus arteriosus closure ISS
 biological_processGO:1904707 positive regulation of vascular smooth muscle cell proliferation IEA
 biological_processGO:2001301 lipoxin biosynthetic process TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003824 catalytic activity IDA
 molecular_functionGO:0004957 prostaglandin E receptor activity IDA
 molecular_functionGO:0016404 15-hydroxyprostaglandin dehydrogenase (NAD+) activity TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0042803 protein homodimerization activity TAS
 molecular_functionGO:0051287 NAD binding IDA
 molecular_functionGO:0070403 NAD+ binding IDA


Pathways (from Reactome)
Pathway description
Synthesis of Lipoxins (LX)
Synthesis of Prostaglandins (PG) and Thromboxanes (TX)
Biosynthesis of D-series resolvins
Biosynthesis of E-series 18(S)-resolvins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000771 Gynecomastia 
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 HP:0000845 Acromegaly "Acromegaly is a condition resulting from overproduction of growth hormone by the pituitary gland in persons with closed epiphyses, and consists chiefly in the enlargement of the distal parts of the body. The circumference of the skull increases, the nose becomes broad, the tongue becomes enlarged, the facial features become coarsened, the mandible grows excessively, and the teeth become separated. The fingers and toes grow chiefly in thickness." [HPO:curators]
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 HP:0000890 Long clavicles 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000972 Palmoplantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the palm of the hand and the sole of the foot." [HPO:probinson]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000976 Eczematoid dermatitis 
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001051 Seborrheic dermatitis "Seborrheic dermatitis is a form of eczema which is closely related to dandruff. It causes dry or greasy peeling of the scalp, eyebrows, and face, and sometimes trunk." [HPO:curators]
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 HP:0001061 Acne 
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 HP:0001070 Mottled pigmentation 
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 HP:0001217 Clubbing "Non-edematous swelling/broadening of the soft tissue of the fingertips in all dimensions." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001369 Arthritis 
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 HP:0001376 Decreased mobility of joints 
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 HP:0001386 Joint swelling 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001519 Dolichostenomelia "A tall and slim body build with increased arm span to height ratio (>1.05) and a reduced upper-to-lower segment ratio (<0.85), i.e., unusually long arms and legs. The extremities as well as the hands and feet are unusually slim." [HPO:curators]
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 HP:0001582 Loose, redundant skin 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001903 Anemia 
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 HP:0002024 Malabsorption 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002653 Bone pain 
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002754 Osteomyelitis 
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 HP:0002758 Osteoarthritis 
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 HP:0002797 Osteolysis 
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 HP:0002815 Abnormality of the knees "An abnormality of the knee joint or surrounding structures." [HPO:curators]
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 HP:0002829 Arthralgia 
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 HP:0002970 Genu varum 
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 HP:0002992 Abnormality of the tibia "Abnormality of the tibia (shinbone)." [HPO:curators]
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 HP:0003040 Arthropathy 
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 HP:0003103 Abnormality of cortical bone "An abnormality of cortical bone (also known as compact bone), which forms the dense surface of bones." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004097 Deviated fingers "Deviated fingers is a term that should be used if one or more fingers of the hand are deviated from their normal position, either to the radial or ulnar side. A deviation of a finger can be caused by an abnormal form of one or more of the phalanges of the affected finger, or by a deviation or displacement of one or more phalanges." [HPO:curators]
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 HP:0004398 Peptic ulcer 
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 HP:0005561 Generalized abnormality of the bone marrow 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0008069 Neoplasia of the skin 
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 HP:0009771 Osteolytic defects of the phalanges of the hand "Dissolution or degeneration of bone tissue of the phalanges of the hand." [HPO:curators]
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 HP:0010541 Cutis gyrata of scalp "The presence of convoluted folds and furrows formed from thickened skin of the scalp resembling cerebriform pattern. The scalp has convoluted and elevated folds, 1 to 2 cm in thickness. The convolutions generally cannot be flattened by traction." [HPO:curators]
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 HP:0010720 Abnormal hair growth pattern "An abnormality of the distribution of hair growth." [HPO:probinson]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0010829 Loss of temperature sensation 
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 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
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 HP:0011362 Abnormal hair quantity "An abnormal amount of hair." [DDD:cmoss]
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 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
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 HP:0100526 Neoplasia of the lungs 
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 HP:0100760 Clubbing of toes "Terminal broadening of the toes (distal phalanges of the toes)." [HPO:sdoelken]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000164120 HPGD / P15428 / 15-hydroxyprostaglandin dehydrogenase  / complex






 

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