ENSG00000172943


Homo sapiens

Features
Gene ID: ENSG00000172943
  
Biological name :PHF8
  
Synonyms : PHD finger protein 8 / PHF8 / Q9UPP1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: p11.22
Gene start: 53936676
Gene end: 54048958
  
Corresponding Affymetrix probe sets: 212916_at (Human Genome U133 Plus 2.0 Array)   215065_at (Human Genome U133 Plus 2.0 Array)   238837_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000405897
Ensembl peptide - ENSP00000404117
Ensembl peptide - ENSP00000408113
Ensembl peptide - ENSP00000416546
Ensembl peptide - ENSP00000414028
Ensembl peptide - ENSP00000410100
Ensembl peptide - ENSP00000319473
Ensembl peptide - ENSP00000338868
Ensembl peptide - ENSP00000340051
Ensembl peptide - ENSP00000350676
Ensembl peptide - ENSP00000379578
Ensembl peptide - ENSP00000388796
Ensembl peptide - ENSP00000397129
Ensembl peptide - ENSP00000398995
NCBI entrez gene - 23133     See in Manteia.
OMIM - 300560
RefSeq - XM_017029362
RefSeq - NM_001184896
RefSeq - NM_001184897
RefSeq - NM_001184898
RefSeq - NM_015107
RefSeq - XM_005261996
RefSeq - XM_005261997
RefSeq - XM_005261999
RefSeq - XM_005262000
RefSeq - XM_011530778
RefSeq - XM_017029361
RefSeq Peptide - NP_001171825
RefSeq Peptide - NP_055922
RefSeq Peptide - NP_001171826
RefSeq Peptide - NP_001171827
swissprot - H0Y3N9
swissprot - H0Y589
swissprot - H0Y7M8
swissprot - H7BZB7
swissprot - Q5JPR8
swissprot - B0QZE1
swissprot - Q9UPP1
swissprot - B0QZZ4
swissprot - B0QZZ3
swissprot - B0QZZ2
Ensembl - ENSG00000172943
  
Related genetic diseases (OMIM): 300263 - Mental retardation syndrome, X-linked, Siderius type, 300263
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kdm7aaENSDARG00000018111Danio rerio
 phf8ENSDARG00000006584Danio rerio
 Phf8ENSMUSG00000041229Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHF2 / O75151 / PHD finger protein 2ENSG0000019772449
KDM7A / Q6ZMT4 / lysine demethylase 7AENSG0000000645937
KDM2B / Q8NHM5 / lysine demethylase 2BENSG0000008909423
KDM2A / Q9Y2K7 / lysine demethylase 2AENSG0000017312022
FBXL19 / Q6PCT2 / F-box and leucine rich repeat protein 19ENSG000000993646


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR003347  JmjC domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle IMP
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007420 brain development ISS
 biological_processGO:0033169 histone H3-K9 demethylation IDA
 biological_processGO:0035574 histone H4-K20 demethylation IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045943 positive regulation of transcription by RNA polymerase I IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0061188 negative regulation of chromatin silencing at rDNA IDA
 biological_processGO:0070544 histone H3-K36 demethylation IDA
 biological_processGO:0071557 histone H3-K27 demethylation IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0031965 nuclear membrane IDA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0005506 iron ion binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IDA
 molecular_functionGO:0032452 histone demethylase activity IDA
 molecular_functionGO:0032454 histone demethylase activity (H3-K9 specific) IDA
 molecular_functionGO:0035064 methylated histone binding IDA
 molecular_functionGO:0035575 histone demethylase activity (H4-K20 specific) IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051213 dioxygenase activity IEA
 molecular_functionGO:0051864 histone demethylase activity (H3-K36 specific) IEA
 molecular_functionGO:0071558 histone demethylase activity (H3-K27 specific) IDA


Pathways (from Reactome)
Pathway description
HDMs demethylate histones


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000276 Long face 
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 HP:0000336 Prominent supraorbital ridges "Abnormal prominence of the supraorbital ridges, which are bony ridge located above the eye sockets in the area of the eyebrows." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000750 Impaired language development 
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 HP:0001176 Large hands 
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 HP:0001177 Preaxial polydactyly (hands) "Supernumerary digits located at the radial side of the hand. Polydactyly (supernumerary digits) involving the thumb occurs in many distinct forms of high variability and severity. Ranging from fleshy nubbins over varying degrees of partial duplication/splitting to completely duplicated or even triplicated thumbs or preaxial (on the radial side of the hand) supernumerary digits." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001611 Nasal speech 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002162 Low posterior hairline 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002942 Thoracic kyphosis 
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 HP:0008734 Decreased testicular size 
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 HP:0010511 Increased length of toes "The presence of abnormally long toes." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000134057 CCNB1 / P14635 / cyclin B1  / reaction
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / reaction / complex
 ENSG00000170312 CDK1 / P06493 / cyclin dependent kinase 1  / reaction
 ENSG00000183955 KMT5A / Q9NQR1 / lysine methyltransferase 5A  / reaction






 

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