ENSG00000196811


Homo sapiens

Features
Gene ID: ENSG00000196811
  
Biological name :CHRNG
  
Synonyms : cholinergic receptor nicotinic gamma subunit / CHRNG / P07510
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.1
Gene start: 232539727
Gene end: 232546403
  
Corresponding Affymetrix probe sets: 221355_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000374145
Ensembl peptide - ENSP00000374143
NCBI entrez gene - 1146     See in Manteia.
OMIM - 100730
RefSeq - NM_005199
RefSeq Peptide - NP_005190
swissprot - P07510
Ensembl - ENSG00000196811
  
Related genetic diseases (OMIM): 253290 - Multiple pterygium syndrome, lethal type, 253290
  265000 - Escobar syndrome, 265000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chrngENSDARG00000086647Danio rerio
 CHRNGENSGALG00000007906Gallus gallus
 ChrngENSMUSG00000026253Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHRNE / Q04844 / cholinergic receptor nicotinic epsilon subunitENSG0000010855649
CHRND / Q07001 / cholinergic receptor nicotinic delta subunitENSG0000013590247
CHRNB1 / P11230 / cholinergic receptor nicotinic beta 1 subunitENSG0000017017540
CHRNA7 / P36544 / cholinergic receptor nicotinic alpha 7 subunitENSG0000017534430
Q9GZZ6 / CHRNA10 / cholinergic receptor nicotinic alpha 10 subunitENSG0000012974927
CHRNA9 / Q9UGM1 / cholinergic receptor nicotinic alpha 9 subunitENSG0000017434326
Q494W8 / CHRFAM7A / CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusionENSG0000016666424
HTR3A / P46098 / 5-hydroxytryptamine receptor 3AENSG0000016673620
HTR3C / Q8WXA8 / 5-hydroxytryptamine receptor 3CENSG0000017808418
HTR3E / A5X5Y0 / 5-hydroxytryptamine receptor 3EENSG0000018603817
HTR3B / O95264 / 5-hydroxytryptamine receptor 3BENSG0000014930517
HTR3D / Q70Z44 / 5-hydroxytryptamine receptor 3DENSG0000018609013


Protein motifs (from Interpro)
Interpro ID Name
 IPR002394  Nicotinic acetylcholine receptor
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006936 muscle contraction TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007271 synaptic transmission, cholinergic IBA
 biological_processGO:0007274 neuromuscular synaptic transmission IBA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0035094 response to nicotine IBA
 biological_processGO:0060078 regulation of postsynaptic membrane potential IEA
 biological_processGO:0060079 excitatory postsynaptic potential IEA
 biological_processGO:0098655 cation transmembrane transport IBA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005892 acetylcholine-gated channel complex IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015267 channel activity TAS
 molecular_functionGO:0015276 ligand-gated ion channel activity TAS
 molecular_functionGO:0015464 acetylcholine receptor activity TAS
 molecular_functionGO:0022848 acetylcholine-gated cation-selective channel activity IBA
 molecular_functionGO:0042166 acetylcholine binding IBA


Pathways (from Reactome)
Pathway description
Highly sodium permeable acetylcholine nicotinic receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000046 Scrotal hypoplasia 
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000157 Abnormality of the tongue "Any abnormality of the tongue." [HPO:curators]
Show

 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000268 Dolichocephaly 
Show

 HP:0000276 Long face 
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000307 Pointed chin 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000324 Facial asymmetry 
Show

 HP:0000343 Long philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000457 Flat nose 
Show

 HP:0000464 Abnormality of the neck 
Show

 HP:0000465 Webbed neck 
Show

 HP:0000476 Cystic hygroma of the neck "A cystic lymphatic lesion of the neck." [HPO:curators]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
Show

 HP:0000883 Thin ribs 
Show

 HP:0000890 Long clavicles 
Show

 HP:0000902 Rib fusion 
Show

 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
Show

 HP:0001040 Multiple pterygia 
Show

 HP:0001060 Axillary pterygia 
Show

 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001371 Contractures 
Show

 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
Show

 HP:0001376 Decreased mobility of joints 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0001646 Abnormality of the aortic valve "Any abnormality of the `aortic valve` (FMA:7236)." [HPO:curators]
Show

 HP:0001760 Abnormality of the feet "An abnormality of the feet (foot deformity) is a disorder of the foot that can either be congenital or acquired. Such deformities can include hammer toe, club foot deformity, flat feet, pes cavus, Congenital vertical talus (rocker bottom foot) & etc." [HPO:curators]
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0001836 Camptodactyly (feet) 
Show

 HP:0001838 Vertical talus 
Show

 HP:0001884 Talipes calcaneovalgus "Talipes calcaneovalgus is a flexible foot deformity (as opposed to a rigid congenital vertical talus foot deformity) that can either present as a positional or structural foot deformity depending on severity and/or causality. The axis of calcaneovalgus deformity is in the tibiotalar joint, where the foot is positioned in extreme hyperextension. On inspection, the foot has an "up and out" appearance, with the dorsal forefoot practically touching the anterior aspect of the ankle and lower leg." [HPO:curators]
Show

 HP:0001961 Hypoplastic heart 
Show

 HP:0001989 Early severe fetal akinesia sequence 
Show

 HP:0001999 Facial dysmorphism 
Show

 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
Show

 HP:0002089 Pulmonary hypoplasia 
Show

 HP:0002162 Low posterior hairline 
Show

 HP:0002304 Akinesia 
Show

 HP:0002557 Hypoplastic nipples 
Show

 HP:0002643 Neonatal respiratory distress 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
Show

 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0002808 Kyphosis 
Show

 HP:0002827 Dislocated hips 
Show

 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
Show

 HP:0002949 Fused cervical vertebrae 
Show

 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
Show

 HP:0003422 Vertebral segmentation defects 
Show

 HP:0003634 Generalized amyoplasia "Generalized congenital lack of development of the muscles, which are then replaced by a mixture of dense fat and fibrous tissue." [HPO:curators]
Show

 HP:0003764 Abnormal or excess nevi 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004459 External auditory canal exostoses 
Show

 HP:0004942 Aortic aneurysms 
Show

 HP:0005617 Bilateral camptodactyly 
Show

 HP:0005905 Abnormal cervical curvature 
Show

 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0006443 Patellar aplasia "Absence of the patella." [HPO:curators]
Show

 HP:0006446 Dysplastic patella 
Show

 HP:0008065 Aplasia/Hypoplasia of the skin 
Show

 HP:0008729 Absence of labia majora 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0009110 Diaphragmatic eventration "A congenital failure of muscular development of part or all of one or both hemidiaphragms, resulting in superior displacement of abdominal viscera and altered lung development." [HPO:curators]
Show

 HP:0009381 Hypoplastic/small fingers 
Show

 HP:0009756 Popliteal pterygium "A pterygium (or pterygia) occuring in the popliteal region (the back of the knee)." [HPO:curators]
Show

 HP:0009757 Intercrural pterygium "A pterygium (or pterygia) in the intercrural (groin) region." [HPO:curators]
Show

 HP:0009759 Neck pterygia "Pterygia affecting the neck." [HPO:curators]
Show

 HP:0009760 Antecubital pterygium "Pterygium affecting the elbow. This is a cutaneous web that can lead to severe flexion contracture of the elbow joint. Antecubital pterygium can be unilateral, bilateral, symmetric, or asysmmetric." [HPO:curators]
Show

 HP:0009761 Anterior clefting of vertebral bodies 
Show

 HP:0009773 Symphalangism affecting the phalanges of the hand "Fusion of two or more phalangeal bones of the hand." [HPO:curators]
Show

 HP:0010318 Aplasia/Hypoplasia of the abdominal wall musculature "Absence or underdevelopment of the abdominal wall musculature." [HPO:curators]
Show

 HP:0012718 Morphological abnormality of the gastrointestinal tract "Abnormal structure of the gastrointestinal tract." [HPO:probinson]
Show

 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000080644 CHRNA3 / P32297 / cholinergic receptor nicotinic alpha 3 subunit  / complex
 ENSG00000117971 CHRNB4 / P30926 / cholinergic receptor nicotinic beta 4 subunit  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr