ENSG00000135902


Homo sapiens

Features
Gene ID: ENSG00000135902
  
Biological name :CHRND
  
Synonyms : cholinergic receptor nicotinic delta subunit / CHRND / Q07001
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.1
Gene start: 232525993
Gene end: 232536667
  
Corresponding Affymetrix probe sets: 207024_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000408819
Ensembl peptide - ENSP00000404950
Ensembl peptide - ENSP00000410801
Ensembl peptide - ENSP00000438380
Ensembl peptide - ENSP00000258385
Ensembl peptide - ENSP00000398143
NCBI entrez gene - 1144     See in Manteia.
OMIM - 100720
RefSeq - XM_011510524
RefSeq - NM_000751
RefSeq - NM_001256657
RefSeq - NM_001311195
RefSeq - NM_001311196
RefSeq Peptide - NP_001298124
RefSeq Peptide - NP_000742
RefSeq Peptide - NP_001243586
RefSeq Peptide - NP_001298125
swissprot - F8WBS0
swissprot - C9JJV8
swissprot - Q07001
swissprot - B4DKT6
swissprot - F8WB46
Ensembl - ENSG00000135902
  
Related genetic diseases (OMIM): 253290 - Multiple pterygium syndrome, lethal type, 253290
  616321 - ?Myasthenic syndrome, congenital, 3A, slow-channel, 616321
  616322 - Myasthenic syndrome, congenital, 3B, fast-channel, 616322
  616323 - ?Myasthenic syndrome, congenital, 3C, associated with acetylcholine receptor deficiency, 616323
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chrndENSDARG00000019342Danio rerio
 CHRNDENSGALG00000007899Gallus gallus
 ChrndENSMUSG00000026251Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHRNG / P07510 / cholinergic receptor nicotinic gamma subunitENSG0000019681147
CHRNE / Q04844 / cholinergic receptor nicotinic epsilon subunitENSG0000010855644
CHRNB1 / P11230 / cholinergic receptor nicotinic beta 1 subunitENSG0000017017538
CHRNA7 / P36544 / cholinergic receptor nicotinic alpha 7 subunitENSG0000017534430
Q9GZZ6 / CHRNA10 / cholinergic receptor nicotinic alpha 10 subunitENSG0000012974927
CHRNA9 / Q9UGM1 / cholinergic receptor nicotinic alpha 9 subunitENSG0000017434326
Q494W8 / CHRFAM7A / CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusionENSG0000016666425
HTR3A / P46098 / 5-hydroxytryptamine receptor 3AENSG0000016673622
HTR3C / Q8WXA8 / 5-hydroxytryptamine receptor 3CENSG0000017808420
HTR3E / A5X5Y0 / 5-hydroxytryptamine receptor 3EENSG0000018603819
HTR3B / O95264 / 5-hydroxytryptamine receptor 3BENSG0000014930518
HTR3D / Q70Z44 / 5-hydroxytryptamine receptor 3DENSG0000018609015


Protein motifs (from Interpro)
Interpro ID Name
 IPR002394  Nicotinic acetylcholine receptor
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003009 skeletal muscle contraction IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport IEA
 biological_processGO:0006936 muscle contraction TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007271 synaptic transmission, cholinergic IBA
 biological_processGO:0007274 neuromuscular synaptic transmission IBA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0035094 response to nicotine IBA
 biological_processGO:0042391 regulation of membrane potential IEA
 biological_processGO:0048630 skeletal muscle tissue growth IMP
 biological_processGO:0050881 musculoskeletal movement IMP
 biological_processGO:0050905 neuromuscular process NAS
 biological_processGO:0060078 regulation of postsynaptic membrane potential IEA
 biological_processGO:0060079 excitatory postsynaptic potential IEA
 biological_processGO:0098655 cation transmembrane transport IBA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005892 acetylcholine-gated channel complex TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane NAS
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0015276 ligand-gated ion channel activity TAS
 molecular_functionGO:0022848 acetylcholine-gated cation-selective channel activity IBA
 molecular_functionGO:0042166 acetylcholine binding IBA


Pathways (from Reactome)
Pathway description
Highly sodium permeable acetylcholine nicotinic receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000457 Flat nose 
Show

 HP:0000467 Neck muscle weakness 
Show

 HP:0000476 Cystic hygroma of the neck "A cystic lymphatic lesion of the neck." [HPO:curators]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000602 Ophthalmoplegia 
Show

 HP:0000883 Thin ribs 
Show

 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
Show

 HP:0001040 Multiple pterygia 
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001371 Contractures 
Show

 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0001961 Hypoplastic heart 
Show

 HP:0001989 Early severe fetal akinesia sequence 
Show

 HP:0001999 Facial dysmorphism 
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
Show

 HP:0002089 Pulmonary hypoplasia 
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002304 Akinesia 
Show

 HP:0002540 Inability to walk 
Show

 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
Show

 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
Show

 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
Show

 HP:0003388 Easy fatigability 
Show

 HP:0003577 Onset at birth 
Show

 HP:0003593 Early onset 
Show

 HP:0003634 Generalized amyoplasia "Generalized congenital lack of development of the muscles, which are then replaced by a mixture of dense fat and fibrous tissue." [HPO:curators]
Show

 HP:0003676 Progressive disorder 
Show

 HP:0005905 Abnormal cervical curvature 
Show

 HP:0009381 Hypoplastic/small fingers 
Show

 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000080644 CHRNA3 / P32297 / cholinergic receptor nicotinic alpha 3 subunit  / complex
 ENSG00000117971 CHRNB4 / P30926 / cholinergic receptor nicotinic beta 4 subunit  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr