Manteia

ENSMUSG00000022261

Mus musculus

Features

Gene ID:	ENSMUSG00000022261

Biological name :	Sdc2

Synonyms :	P43407 / Sdc2 / Syndecan-2

Possible biological names infered from orthology :	P34741

Species:	Mus musculus

Chr. number:	15
Strand:	1
Band:	B3.1
Gene start:	32920723
Gene end:	33034935

Corresponding Affymetrix probe sets:	10423548 (MoGene1.0st) 1417011_at (Mouse Genome 430 2.0 Array) 1417012_at (Mouse Genome 430 2.0 Array) 1431474_at (Mouse Genome 430 2.0 Array) 1448545_at (Mouse Genome 430 2.0 Array)

Cross references:	Ensembl peptide - ENSMUSP00000022871 NCBI entrez gene - 15529 See in Manteia. MGI - MGI:1349165 RefSeq - NM_008304 RefSeq Peptide - NP_032330 swissprot - P43407 Ensembl - ENSMUSG00000022261

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Protein motifs (from Interpro)

Interpro ID	Name
IPR001050	Syndecan
IPR003585	Neurexin/syndecan/glycophorin C
IPR021157	Cytochrome c1, transmembrane anchor, C-terminal
IPR027789	Syndecan/Neurexin domain
IPR030479	Syndecan, conserved site
IPR031201	Syndecan-2

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007399	nervous system development	IEA
biological_process	GO:0016477	cell migration	IBA
biological_process	GO:0030154	cell differentiation	IEA
biological_process	GO:0048814	regulation of dendrite morphogenesis	IMP
cellular_component	GO:0005796	Golgi lumen	TAS
cellular_component	GO:0009986	cell surface	IBA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
cellular_component	GO:0031012	extracellular matrix	IEA
molecular_function	GO:0005515	protein binding	IPI
molecular_function	GO:0030165	PDZ domain binding	IEA
molecular_function	GO:0042802	identical protein binding	IEA

Pathways (from Reactome)

Pathway description

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
MP:0001303	abnormal lens morphology	"malformed transparent structure of the eye responsible for focusing light rays" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:40203]	Show Allelic Composition: Scarb1^{tm1b(EUCOMM)Wtsi}/Scarb1^{tm1b(EUCOMM)Wtsi} Genetic Background: C57BL/6N-Scarb1^{tm1b(EUCOMM)Wtsi}/Bay
MP:0002075	abnormal coat color	"irregular or unusual pigmentation pattern of the hair in relation to control animals" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]	Show Allelic Composition: Scarb1^{tm1b(EUCOMM)Wtsi}/Scarb1^{tm1b(EUCOMM)Wtsi} Genetic Background: C57BL/6N-Scarb1^{tm1b(EUCOMM)Wtsi}/Bay

Interacting proteins (from Reactome)

Interactor ID	Name	Interaction type
ENSMUSG00000001300	Efnb2 / P52800 / Ephrin-B2 / P52799*	/ reaction
ENSMUSG00000003934	Efnb3 / O35393 / Ephrin-B3 / Q15768*	/ reaction
ENSMUSG00000005958	Ephb3 / P54754 / Ephrin type-B receptor 3 / P54753* / EPH receptor B3*	/ reaction
ENSMUSG00000022261	Sdc2 / P43407 / Syndecan-2 / P34741*	/ -
ENSMUSG00000032537	Ephb1 / Q8CBF3 / Ephrin type-B receptor 1 / P54762* / EPH receptor B1*	/ reaction
ENSMUSG00000031217	Efnb1 / P52795 / Ephrin-B1 / P98172*	/ reaction
ENSMUSG00000029710	Ephb4 / P54761 / Ephrin type-B receptor 4 / P54760* / EPH receptor B4*	/ reaction
ENSMUSG00000028664	Ephb2 / P54763 / Ephrin type-B receptor 2 / P29323* / EPH receptor B2*	/ reaction

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr