ENSDARG00000041450


Danio rerio

Features
Gene ID: ENSDARG00000041450
  
Biological name :rab11a
  
Synonyms : rab11a / RAB11a, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 19131773
Gene end: 19139152
  
Corresponding Affymetrix probe sets: Dr.13128.1.S1_at (Zebrafish Array)   Dr.14820.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000060765
NCBI entrez gene - 492487     See in Manteia.
swissprot - Q5U3E1
ZFIN ID - ZDB-GENE-041114-53
Ensembl - ENSDARG00000041450
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab11ba / RAB11B, member RAS oncogene family, a / RAB11B* / P46638* / Q15907* / RAB11B, member RAS oncogene family*ENSDARG0000004187889
rab11bb / RAB11B, member RAS oncogene family, b / RAB11B* / P46638* / Q15907* / RAB11B, member RAS oncogene family*ENSDARG0000009008687
rab11al / RAB11a, member RAS oncogene family, likeENSDARG0000001434085
rab25a / RAB25, member RAS oncogene family a / RAB25* / Q9WTL2* / P57735* / RAB25, member RAS oncogene family*ENSDARG0000005880063
rab25b / RAB25, member RAS oncogene family b / RAB25* / P57735* / RAB25, member RAS oncogene family*ENSDARG0000005295462
rab4b / RAB4B, member RAS oncogene family / Q91ZR1* / P61018* / RAB4B-EGLN2* / RAB4B-EGLN2 readthrough (NMD candidate)*ENSDARG0000001217745
rab2a / RAB2A, member RAS oncogene family / P53994* / P61019* / Ras-related protein Rab-2A *ENSDARG0000002026143
rab4a / Q6PHI9 / RAB4a, member RAS oncogene family / P56371* / P20338* / Ras-related protein Rab-4A *ENSDARG0000001914443
rab14 / RAB14, member RAS oncogene family / P61106* / Q91V41*ENSDARG0000007424643
rab14l / RAB14, member RAS oncogene family, likeENSDARG0000003518842
rab39bb / RAB39B, member RAS oncogene family b / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*ENSDARG0000003650139
Q6DHC1 / rab18b / RAB18B, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*ENSDARG0000009834438
rab39ba / RAB39B, member RAS oncogene family a / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*ENSDARG0000001931238
rab42a / RAB42, member RAS oncogene family aENSDARG0000003421537
rab18a / RAB18A, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*ENSDARG0000005529136
rab42b / RAB42, member RAS oncogene familyENSDARG0000010117033
CU571310.1 / RAB42* / Q8N4Z0* / RAB42, member RAS oncogene family*ENSDARG0000010258032
si:dkey-34d22.2ENSDARG0000010037928
si:dkey-34d22.5ENSDARG0000010486527
si:ch211-247i17.1ENSDARG0000007672717


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IMP
 biological_processGO:0001944 vasculature development IMP
 biological_processGO:0006887 exocytosis IBA
 biological_processGO:0032402 melanosome transport IMP
 biological_processGO:0070121 Kupffer"s vesicle development IMP
 cellular_componentGO:0055037 recycling endosome IDA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle decreased volume , abnormal
Kupffers vesicle basolateral plasma membrane physical object quality , abnormal
Kupffers vesicle morphology , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0001094 whole organism whole organism curved dorsal , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel decreased functionality , abnormal
Show

 ZFA:0005249 vasculature vasculature malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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