Manteia

ENSDARG00000041878

Danio rerio

Features

Gene ID:	ENSDARG00000041878

Biological name :	rab11ba

Synonyms :	rab11ba / RAB11B, member RAS oncogene family, a

Possible biological names infered from orthology :	P46638 / Q15907 / RAB11B / RAB11B, member RAS oncogene family

Species:	Danio rerio

Chr. number:	22
Strand:	1
Band:
Gene start:	17499905
Gene end:	17506843

Corresponding Affymetrix probe sets:	Dr.1915.1.S1_at (Zebrafish Array) NM_214770_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000061365 Ensembl peptide - ENSDARP00000114922 NCBI entrez gene - 406798 See in Manteia. RefSeq - NM_214770 RefSeq Peptide - NP_999935 swissprot - Q1LVZ0 swissprot - Q1LVZ1 ZFIN ID - ZDB-GENE-040426-2860 Ensembl - ENSDARG00000041878

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
RAB11B	ENSGALG00000037802	Gallus gallus
Q15907	ENSG00000185236	Homo sapiens
P46638	ENSMUSG00000077450	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
rab11bb / RAB11B, member RAS oncogene family, b / RAB11B* / P46638* / Q15907* / RAB11B, member RAS oncogene family*	ENSDARG00000090086	95
rab11a / RAB11a, member RAS oncogene family	ENSDARG00000041450	88
rab11al / RAB11a, member RAS oncogene family, like	ENSDARG00000014340	81
rab25a / RAB25, member RAS oncogene family a / RAB25* / Q9WTL2* / P57735* / RAB25, member RAS oncogene family*	ENSDARG00000058800	63
rab25b / RAB25, member RAS oncogene family b / RAB25* / P57735* / RAB25, member RAS oncogene family*	ENSDARG00000052954	62
rab4b / RAB4B, member RAS oncogene family / Q91ZR1* / P61018* / RAB4B-EGLN2* / RAB4B-EGLN2 readthrough (NMD candidate)*	ENSDARG00000012177	46
rab2a / RAB2A, member RAS oncogene family / P53994* / P61019* / Ras-related protein Rab-2A *	ENSDARG00000020261	44
rab4a / Q6PHI9 / RAB4a, member RAS oncogene family / P56371* / P20338* / Ras-related protein Rab-4A *	ENSDARG00000019144	43
rab14 / RAB14, member RAS oncogene family / P61106* / Q91V41*	ENSDARG00000074246	42
rab14l / RAB14, member RAS oncogene family, like	ENSDARG00000035188	42
Q6DHC1 / rab18b / RAB18B, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*	ENSDARG00000098344	38
rab39ba / RAB39B, member RAS oncogene family a / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*	ENSDARG00000019312	37
rab18a / RAB18A, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*	ENSDARG00000055291	37
rab39bb / RAB39B, member RAS oncogene family b / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*	ENSDARG00000036501	37
rab42a / RAB42, member RAS oncogene family a	ENSDARG00000034215	35
CU571310.1 / RAB42* / Q8N4Z0* / RAB42, member RAS oncogene family*	ENSDARG00000102580	33
rab42b / RAB42, member RAS oncogene family	ENSDARG00000101170	32
si:dkey-34d22.2	ENSDARG00000100379	27
si:dkey-34d22.5	ENSDARG00000104865	27
si:ch211-247i17.1	ENSDARG00000076727	17

Protein motifs (from Interpro)

Interpro ID	Name
IPR001806	Small GTPase superfamily
IPR005225	Small GTP-binding protein domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0032402	melanosome transport	IBA
biological_process	GO:0045054	constitutive secretory pathway	IBA
biological_process	GO:0045055	regulated exocytosis	IBA
cellular_component	GO:0055037	recycling endosome	IBA
molecular_function	GO:0003924	GTPase activity	IEA
molecular_function	GO:0005525	GTP binding	IEA

Pathways (from Reactome)

Pathway description

TBC/RABGAPs

RAB geranylgeranylation

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID	Name	Interaction type
ENSDARG00000003520	tbc1d14 / TBC1 domain family, member 14 / Q9P2M4*	/ complex / reaction
ENSDARG00000074481	ulk1b / unc-51 like autophagy activating kinase 1 / ULK1* / O75385* / unc-51 like kinase 1*	/ reaction / complex

1 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr