Manteia

ENSDARG00000101170

Danio rerio

Features

Gene ID:	ENSDARG00000101170

Biological name :	rab42b

Synonyms :	rab42b / RAB42, member RAS oncogene family

Possible biological names infered from orthology :

Species:	Danio rerio

Chr. number:	16
Strand:	1
Band:
Gene start:	35401543
Gene end:	35405887

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000131700 NCBI entrez gene - 550378 See in Manteia. RefSeq - NM_001017683 RefSeq Peptide - NP_001017683 swissprot - A0A0R4IAR3 ZFIN ID - ZDB-GENE-050417-172 Ensembl - ENSDARG00000101170

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
	ENSGALG00000000994	Gallus gallus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
rab42a / RAB42, member RAS oncogene family a	ENSDARG00000034215	58
rab39bb / RAB39B, member RAS oncogene family b / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*	ENSDARG00000036501	51
rab39ba / RAB39B, member RAS oncogene family a / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*	ENSDARG00000019312	50
si:dkey-34d22.5	ENSDARG00000104865	46
si:dkey-34d22.2	ENSDARG00000100379	45
CU571310.1 / RAB42* / Q8N4Z0* / RAB42, member RAS oncogene family*	ENSDARG00000102580	44
rab11al / RAB11a, member RAS oncogene family, like	ENSDARG00000014340	35
rab14 / RAB14, member RAS oncogene family / P61106* / Q91V41*	ENSDARG00000074246	35
rab4a / Q6PHI9 / RAB4a, member RAS oncogene family / P56371* / P20338* / Ras-related protein Rab-4A *	ENSDARG00000019144	34
rab14l / RAB14, member RAS oncogene family, like	ENSDARG00000035188	34
rab4b / RAB4B, member RAS oncogene family / Q91ZR1* / P61018* / RAB4B-EGLN2* / RAB4B-EGLN2 readthrough (NMD candidate)*	ENSDARG00000012177	34
Q6DHC1 / rab18b / RAB18B, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*	ENSDARG00000098344	33
rab11bb / RAB11B, member RAS oncogene family, b / RAB11B* / P46638* / Q15907* / RAB11B, member RAS oncogene family*	ENSDARG00000090086	33
rab2a / RAB2A, member RAS oncogene family / P53994* / P61019* / Ras-related protein Rab-2A *	ENSDARG00000020261	33
rab11a / RAB11a, member RAS oncogene family	ENSDARG00000041450	33
rab18a / RAB18A, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*	ENSDARG00000055291	33
rab25a / RAB25, member RAS oncogene family a / RAB25* / Q9WTL2* / P57735* / RAB25, member RAS oncogene family*	ENSDARG00000058800	32
rab11ba / RAB11B, member RAS oncogene family, a / RAB11B* / P46638* / Q15907* / RAB11B, member RAS oncogene family*	ENSDARG00000041878	32
rab25b / RAB25, member RAS oncogene family b / RAB25* / P57735* / RAB25, member RAS oncogene family*	ENSDARG00000052954	29
si:ch211-247i17.1	ENSDARG00000076727	20

Protein motifs (from Interpro)

Interpro ID	Name
IPR001806	Small GTPase superfamily
IPR005225	Small GTP-binding protein domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
molecular_function	GO:0003924	GTPase activity	IEA
molecular_function	GO:0005525	GTP binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr