Manteia

ENSDARG00000102580

Danio rerio

Features

Gene ID:	ENSDARG00000102580

Biological name :	CU571310.1

Synonyms :	CU571310.1

Possible biological names infered from orthology :	Q0PD08 / Q8N4Z0 / RAB42 / RAB42, member RAS oncogene family / Ras-related protein Rab-42

Species:	Danio rerio

Chr. number:	17
Strand:	1
Band:
Gene start:	5623514
Gene end:	5629978

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000130389 Ensembl peptide - ENSDARP00000143548 NCBI entrez gene - 100330257 See in Manteia. swissprot - E7F060 Ensembl - ENSDARG00000102580

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
RAB42	ENSG00000188060	Homo sapiens
Rab42	ENSMUSG00000089687	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
rab42a / RAB42, member RAS oncogene family a	ENSDARG00000034215	47
rab42b / RAB42, member RAS oncogene family	ENSDARG00000101170	45
rab39bb / RAB39B, member RAS oncogene family b / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*	ENSDARG00000036501	43
rab39ba / RAB39B, member RAS oncogene family a / RAB39B* / Q8BHC1* / Q96DA2* / RAB39B, member RAS oncogene family*	ENSDARG00000019312	42
rab11bb / RAB11B, member RAS oncogene family, b / RAB11B* / P46638* / Q15907* / RAB11B, member RAS oncogene family*	ENSDARG00000090086	35
rab2a / RAB2A, member RAS oncogene family / P53994* / P61019* / Ras-related protein Rab-2A *	ENSDARG00000020261	34
rab11ba / RAB11B, member RAS oncogene family, a / RAB11B* / P46638* / Q15907* / RAB11B, member RAS oncogene family*	ENSDARG00000041878	34
Q6DHC1 / rab18b / RAB18B, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*	ENSDARG00000098344	33
rab18a / RAB18A, member RAS oncogene family / RAB18* / Q9NP72* / P35293* / RAB18, member RAS oncogene family*	ENSDARG00000055291	33
rab11a / RAB11a, member RAS oncogene family	ENSDARG00000041450	33
rab11al / RAB11a, member RAS oncogene family, like	ENSDARG00000014340	33
si:dkey-34d22.5	ENSDARG00000104865	33
rab14l / RAB14, member RAS oncogene family, like	ENSDARG00000035188	32
rab14 / RAB14, member RAS oncogene family / P61106* / Q91V41*	ENSDARG00000074246	31
si:dkey-34d22.2	ENSDARG00000100379	31
rab25b / RAB25, member RAS oncogene family b / RAB25* / P57735* / RAB25, member RAS oncogene family*	ENSDARG00000052954	31
rab25a / RAB25, member RAS oncogene family a / RAB25* / Q9WTL2* / P57735* / RAB25, member RAS oncogene family*	ENSDARG00000058800	30
rab4b / RAB4B, member RAS oncogene family / Q91ZR1* / P61018* / RAB4B-EGLN2* / RAB4B-EGLN2 readthrough (NMD candidate)*	ENSDARG00000012177	29
rab4a / Q6PHI9 / RAB4a, member RAS oncogene family / P56371* / P20338* / Ras-related protein Rab-4A *	ENSDARG00000019144	28
si:ch211-247i17.1	ENSDARG00000076727	19

Protein motifs (from Interpro)

Interpro ID	Name
IPR001806	Small GTPase superfamily
IPR005225	Small GTP-binding protein domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
cellular_component	GO:0005794	Golgi apparatus	IBA
molecular_function	GO:0003924	GTPase activity	IEA
molecular_function	GO:0005525	GTP binding	IEA

Pathways (from Reactome)

Pathway description

RAB geranylgeranylation

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr