ENSG00000001626


Homo sapiens

Features
Gene ID: ENSG00000001626
  
Biological name :CFTR
  
Synonyms : CFTR / cystic fibrosis transmembrane conductance regulator / P13569
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q31.2
Gene start: 117465784
Gene end: 117715971
  
Corresponding Affymetrix probe sets: 205043_at (Human Genome U133 Plus 2.0 Array)   215702_s_at (Human Genome U133 Plus 2.0 Array)   215703_at (Human Genome U133 Plus 2.0 Array)   217026_at (Human Genome U133 Plus 2.0 Array)   234702_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000003084
Ensembl peptide - ENSP00000470177
Ensembl peptide - ENSP00000419254
Ensembl peptide - ENSP00000417012
Ensembl peptide - ENSP00000389119
NCBI entrez gene - 1080     See in Manteia.
OMIM - 602421
RefSeq - XM_017011699
RefSeq - NM_000492
RefSeq - XM_011515751
RefSeq - XM_011515753
RefSeq - XM_011515754
RefSeq Peptide - NP_000483
swissprot - P13569
swissprot - E7EPB6
swissprot - C9J6L5
swissprot - H0Y8A9
swissprot - M0QYZ3
swissprot - A0A024R730
Ensembl - ENSG00000001626
  
Related genetic diseases (OMIM): 277180 - Congenital bilateral absence of vas deferens, 277180
  219700 - Cystic fibrosis, 219700
  602421 - Sweat chloride elevation without CF
  211400 - {Bronchiectasis with or without elevated sweat chloride 1, modifier of}, 211400
  167800 - {Pancreatitis, hereditary}, 167800
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cftrENSDARG00000041107Danio rerio
 CFTRENSGALG00000032986Gallus gallus
 CftrENSMUSG00000041301Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCC4 / O15439 / ATP binding cassette subfamily C member 4ENSG0000012525731
ABCC2 / Q92887 / ATP binding cassette subfamily C member 2ENSG0000002383925
ABCC11 / Q96J66 / ATP binding cassette subfamily C member 11ENSG0000012127024
ABCC1 / P33527 / ATP binding cassette subfamily C member 1ENSG0000010322224
ABCC5 / O15440 / ATP binding cassette subfamily C member 5ENSG0000011477023
ABCC3 / O15438 / ATP binding cassette subfamily C member 3ENSG0000010884623
ABCC12 / Q96J65 / ATP binding cassette subfamily C member 12ENSG0000014079823
ABCC9 / O60706 / ATP binding cassette subfamily C member 9ENSG0000006943122
ABCC8 / Q09428 / ATP binding cassette subfamily C member 8ENSG0000000607122


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR009147  Cystic fibrosis transmembrane conductance regulator
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR025837  CFTR regulator domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036640  ABC transporter type 1, transmembrane domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006695 cholesterol biosynthetic process IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0015701 bicarbonate transport IDA
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0030301 cholesterol transport IEA
 biological_processGO:0035377 transepithelial water transport IMP
 biological_processGO:0035774 positive regulation of insulin secretion involved in cellular response to glucose stimulus IMP
 biological_processGO:0045921 positive regulation of exocytosis IMP
 biological_processGO:0048240 sperm capacitation ISS
 biological_processGO:0050891 multicellular organismal water homeostasis IMP
 biological_processGO:0051454 intracellular pH elevation ISS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060081 membrane hyperpolarization ISS
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:0071320 cellular response to cAMP ISS
 biological_processGO:0099133 ATP hydrolysis coupled anion transmembrane transport IEA
 biological_processGO:1902161 positive regulation of cyclic nucleotide-gated ion channel activity IMP
 biological_processGO:1902476 chloride transmembrane transport IEA
 biological_processGO:1902943 positive regulation of voltage-gated chloride channel activity IDA
 biological_processGO:1904322 cellular response to forskolin IDA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IMP
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0010008 endosome membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IMP
 cellular_componentGO:0030660 Golgi-associated vesicle membrane TAS
 cellular_componentGO:0030665 clathrin-coated vesicle membrane TAS
 cellular_componentGO:0031205 endoplasmic reticulum Sec complex IDA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0055037 recycling endosome IDA
 cellular_componentGO:0055038 recycling endosome membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0005260 intracellularly ATP-gated chloride channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0015106 bicarbonate transmembrane transporter activity ISS
 molecular_functionGO:0015108 chloride transmembrane transporter activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0017081 chloride channel regulator activity TAS
 molecular_functionGO:0019869 chloride channel inhibitor activity IDA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0030165 PDZ domain binding IDA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA
 molecular_functionGO:0043225 ATPase-coupled anion transmembrane transporter activity TAS


Pathways (from Reactome)
Pathway description
ABC-family proteins mediated transport
RHO GTPases regulate CFTR trafficking
Defective CFTR causes cystic fibrosis
Ub-specific processing proteases
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000027 Azoospermia 
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 HP:0000798 Oligospermia 
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 HP:0000819 Diabetes mellitus 
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 HP:0000837 Elevated gonadotropins 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0001648 Cor pulmonale 
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 HP:0001738 Exocrine pancreatic insufficiency 
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 HP:0001944 Dehydration 
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 HP:0001974 Leukocytosis "An abnormal increase in the number of `leukocytes` (CL:0000738) in the `blood` (FMA:9670)." [HPO:probinson]
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 HP:0002024 Malabsorption 
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 HP:0002027 Abdominal pain 
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 HP:0002035 Rectal prolapse 
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 HP:0002099 Asthma "Asthma is characterized by increased responsiveness of the tracheobronchial tree to multiple stimuli, leading to narrowing of the air passages with resultant dyspnea, cough, and wheezing." [HPO:curators]
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 HP:0002110 Bronchiectasis 
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 HP:0002150 Hypercalciuria 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002613 Biliary cirrhosis 
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 HP:0002721 Immunodeficiency 
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 HP:0003251 Male infertility 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0004401 Meconium ileus 
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 HP:0005213 Pancreatic calcification 
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 HP:0006528 Chronic lung disease 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0006538 Bronchopulmonary infection 
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 HP:0008734 Decreased testicular size 
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 HP:0011227 Elevated C-reactive protein level "An abnormal elevation of the C-reactive protein level in serum." [HPO:probinson]
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 HP:0011961 Non-obstructive azoospermia "Absence of any measurable level of sperm in his semen, resulting from a defect in the production of spermatozoa in the testes. Can be differentiated from obstructive azoospermia on the basis of testicular biopsy." [HPO:probinson, pmid:20514278]
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 HP:0011962 Obstructive azoospermia "Absence of any measurable level of sperm in his semen, resulting from post-testicular obstruction or retrograde ejaculation. Can be differentiated from obstructive azoospermia on the basis of testicular biopsy." [HPO:probinson, pmid:20514278]
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 HP:0012210 Abnormal renal morphology "Any structural anomaly of the `kidney` (FMA:7203)." [HPO:probinson]
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 HP:0012236 Elevated sweat chloride "An increased concentration of chloride in the sweat." [HPO:probinson]
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 HP:0012379 Abnormal enzyme/coenzyme activity "An altered ability of any enzyme or their cofactors to act as catalysts." [HPO:probinson, MP:0005584]
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 HP:0012873 Absent vas deferens "Aplasia (congenital absence) of the vas deferens." [HPO:probinson]
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 HP:0030247 Splanchnic vein thrombosis "The term splanchnic vein thrombosis encompasses Budd-Chiari syndrome (hepatic vein thrombosis), extrahepatic portal vein obstruction (EHPVO), and mesenteric vein thrombosis; the word splanchnic is used to refer to the visceral organs (of the abdominal cavity)." [HPO:probinson, pmid:20532730]
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 HP:0100027 Recurrent pancreatitis "A `recurrent` (PATO:0000427) form of `pancreatitis` (HP:0001733)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000001626 CFTR / P13569 / cystic fibrosis transmembrane conductance regulator  / complex
 ENSG00000103194 USP10 / Q14694 / ubiquitin specific peptidase 10  / complex
 ENSG00000047932 GOPC / Q9HD26 / golgi associated PDZ and coiled-coil motif containing  / complex
 ENSG00000119729 RHOQ / P17081 / ras homolog family member Q  / reaction / complex






 

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