ENSG00000117450


Homo sapiens

Features
Gene ID: ENSG00000117450
  
Biological name :PRDX1
  
Synonyms : peroxiredoxin 1 / PRDX1 / Q06830
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.1
Gene start: 45511036
Gene end: 45523047
  
Corresponding Affymetrix probe sets: 208680_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000407034
Ensembl peptide - ENSP00000361150
Ensembl peptide - ENSP00000361152
Ensembl peptide - ENSP00000389047
Ensembl peptide - ENSP00000262746
NCBI entrez gene - 5052     See in Manteia.
OMIM - 176763
RefSeq - NM_001202431
RefSeq - NM_002574
RefSeq - NM_181696
RefSeq - NM_181697
RefSeq Peptide - NP_002565
RefSeq Peptide - NP_001189360
RefSeq Peptide - NP_859048
RefSeq Peptide - NP_859047
swissprot - Q06830
swissprot - A0A0A0MSI0
swissprot - A0A0A0MRQ5
Ensembl - ENSG00000117450
  
Related genetic diseases (OMIM): 277400 - Methylmalonic aciduria and homocystinuria, cblC type, digenic, 277400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prdx1ENSDARG00000058734Danio rerio
 PRDX1ENSGALG00000010243Gallus gallus
 Prdx1ENSMUSG00000028691Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRDX2 / P32119 / peroxiredoxin 2ENSG0000016781577
PRDX4 / Q13162 / peroxiredoxin 4ENSG0000012313168
PRDX3 / P30048 / peroxiredoxin 3ENSG0000016567263


Protein motifs (from Interpro)
Interpro ID Name
 IPR000866  Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant
 IPR013766  Thioredoxin domain
 IPR019479  Peroxiredoxin, C-terminal
 IPR024706  Peroxiredoxin, AhpC-type
 IPR036249  Thioredoxin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000302 response to reactive oxygen species IEA
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0001895 retina homeostasis HEP
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0019430 removal of superoxide radicals IEA
 biological_processGO:0030101 natural killer cell activation IDA
 biological_processGO:0032872 regulation of stress-activated MAPK cascade IEA
 biological_processGO:0034101 erythrocyte homeostasis IEA
 biological_processGO:0034599 cellular response to oxidative stress TAS
 biological_processGO:0042267 natural killer cell mediated cytotoxicity IEA
 biological_processGO:0042744 hydrogen peroxide catabolic process IDA
 biological_processGO:0045454 cell redox homeostasis IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0098869 cellular oxidant detoxification IEA
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0042470 melanosome IEA
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004601 peroxidase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008379 thioredoxin peroxidase activity IDA
 molecular_functionGO:0016209 antioxidant activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0045296 cadherin binding IDA
 molecular_functionGO:0051920 peroxiredoxin activity IEA


Pathways (from Reactome)
Pathway description
Detoxification of Reactive Oxygen Species
TP53 Regulates Metabolic Genes
Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimers disease models


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000319 Flat philtrum 
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000505 Impaired vision 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001889 Megaloblastic anemia 
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 HP:0001907 Thromboembolism 
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 HP:0001942 Metabolic acidosis 
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 HP:0002071 Extrapyramidal signs 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002156 Homocystinuria 
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 HP:0002160 Homocystinemia 
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 HP:0002912 Methylmalonic acidemia 
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 HP:0003145 Decreased adenosylcobalamin (ADOCBL) 
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 HP:0003153 Cystathioninuria 
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 HP:0003210 Decreased methylmalonyl-CoA mutase activity 
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 HP:0003223 Decreased methylcobalamin (MECBL) 
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 HP:0003286 Cystathioninemia 
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 HP:0003524 Decreased methionine synthase (MTR, 156570) activity 
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 HP:0003593 Early onset 
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 HP:0003658 Decreased serum methionine 
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 HP:0005575 Hemolytic-uremic syndrome 
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 HP:0007663 Decreased central vision 
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 HP:0008872 Feeding problems in infancy 
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 HP:0012120 Methylmalonic aciduria "Increased concentration of `methylmalonic acid` (CHEBI:30860) in the urine." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000130766 SESN2 / P58004 / sestrin 2  / complex / reaction
 ENSG00000080546 SESN1 / Q9Y6P5 / sestrin 1  / reaction / complex
 ENSG00000136810 TXN / P10599 / thioredoxin  / reaction
 ENSG00000117450 PRDX1 / Q06830 / peroxiredoxin 1  / complex
 ENSG00000164885 CDK5 / Q00535 / cyclin dependent kinase 5  / reaction






 

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