ENSG00000159403


Homo sapiens

Features
Gene ID: ENSG00000159403
  
Biological name :C1R
  
Synonyms : C1R / complement C1r / P00736
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p13.31
Gene start: 7080209
Gene end: 7092607
  
Corresponding Affymetrix probe sets: 212067_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000445285
Ensembl peptide - ENSP00000444271
Ensembl peptide - ENSP00000446356
Ensembl peptide - ENSP00000438615
Ensembl peptide - ENSP00000438636
Ensembl peptide - ENSP00000439223
Ensembl peptide - ENSP00000441601
Ensembl peptide - ENSP00000442946
Ensembl peptide - ENSP00000444009
NCBI entrez gene - 715     See in Manteia.
OMIM - 613785
RefSeq - XM_017019915
RefSeq - NM_001354346
RefSeq - NM_001733
RefSeq Peptide - NP_001341275
RefSeq Peptide - NP_001724
swissprot - F5H3A3
swissprot - F5H3N3
swissprot - F5H6Y3
swissprot - P00736
swissprot - B4DPQ0
swissprot - F5GWL0
swissprot - F5H1V0
swissprot - F5H1N6
swissprot - F5H2D0
Ensembl - ENSG00000159403
  
Related genetic diseases (OMIM): 130080 - Ehlers-Danlos syndrome, periodontal type, 1, 130080
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000014659Gallus gallus
 C1raENSMUSG00000055172Mus musculus
 C1rbENSMUSG00000098470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MASP2 / O00187 / mannan binding lectin serine peptidase 2ENSG0000000972440
MASP1 / P48740 / mannan binding lectin serine peptidase 1ENSG0000012724139
C1S / P09871 / complement C1sENSG0000018232638
C1RL / Q9NZP8 / complement C1r subcomponent likeENSG0000013917835
PAMR1 / Q6UXH9 / peptidase domain containing associated with muscle regeneration 1ENSG0000014909021
F10 / P00742 / coagulation factor XENSG0000012621819
PROC / P04070 / protein C, inactivator of coagulation factors Va and VIIIaENSG0000011571819
F9 / P00740 / coagulation factor IXENSG0000010198119
F7 / P08709 / coagulation factor VIIENSG0000005759318
HP / P00738 / haptoglobinENSG0000025701717
HPR / P00739 / haptoglobin-related proteinENSG0000026170116
PROZ / P22891 / protein Z, vitamin K dependent plasma glycoproteinENSG0000012623114


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000436  Sushi/SCR/CCP domain
 IPR000742  EGF-like domain
 IPR000859  CUB domain
 IPR001254  Serine proteases, trypsin domain
 IPR001314  Peptidase S1A, chymotrypsin family
 IPR001881  EGF-like calcium-binding domain
 IPR009003  Peptidase S1, PA clan
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR033116  Serine proteases, trypsin family, serine active site
 IPR035707  Complement subcomponent C1r
 IPR035914  Spermadhesin, CUB domain superfamily
 IPR035976  Sushi/SCR/CCP superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0006956 complement activation TAS
 biological_processGO:0006958 complement activation, classical pathway IEA
 biological_processGO:0030449 regulation of complement activation TAS
 biological_processGO:0031638 zymogen activation IDA
 biological_processGO:0045087 innate immune response IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0072562 blood microparticle HDA
 molecular_functionGO:0004252 serine-type endopeptidase activity IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008236 serine-type peptidase activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Initial triggering of complement
Classical antibody-mediated complement activation
Regulation of Complement cascade


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000098 Increased body height 
Show

 HP:0000123 Nephritis "The presence of inflammation affecting the kidney." [HPO:curators]
Show

 HP:0000212 Gingival hyperplasia 
Show

 HP:0000225 Gingival bleeding 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000592 Blue sclerae 
Show

 HP:0000691 Microdontia 
Show

 HP:0000704 Periodontal disease 
Show

 HP:0000963 Thin skin 
Show

 HP:0000974 Hyperextensible skin 
Show

 HP:0000977 Soft skin 
Show

 HP:0000978 Ecchymoses 
Show

 HP:0001034 Hyperpigmented macules 
Show

 HP:0001058 Poor wound healing 
Show

 HP:0001075 Atrophic scars 
Show

 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
Show

 HP:0001369 Arthritis 
Show

 HP:0001388 Joint laxity 
Show

 HP:0001609 Hoarse voice 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002719 Recurrent infections 
Show

 HP:0002761 Generalized joint laxity "Joint hypermobility (ability of a joint to move beyond its normal range of motion) affecting many or all joints of the body." [HPO:curators]
Show

 HP:0002829 Arthralgia 
Show

 HP:0002837 Bronchitis 
Show

 HP:0002960 Autoimmune disease 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004431 Complement deficiency 
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0006308 Atrophy of alveolar ridges 
Show

 HP:0006323 Premature deciduous tooth loss 
Show

 HP:0006349 Absence of permanent teeth "A congenital defect characterized by the absence of one or more permanent teeth, including oligodontia, hypodonita, and adontia of the permanent dentition." [HPO:probinson]
Show

 HP:0006480 Premature loss of teeth 
Show

 HP:0007417 Discoid lupus erythematosus 
Show

 HP:0007517 Cutis laxa, hands and feet 
Show

 HP:0030816 Gingival recession "The loss of gum tissue. The result is that gum tissue is recessed and its position on the tooth is lowered, exposing the roots of the teeth." []
Show

 HP:0410027 Alveolar bone loss around teeth "A decrease in the amount of alveolar bone around the root of a tooth." []
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000149131 P05155 / SERPING1 / serpin family G member 1  / complex / reaction
 ENSG00000182326 C1S / P09871 / complement C1s  / complex
 ENSG00000173369 C1QB / P02746 / complement C1q B chain  / complex
 ENSG00000159189 C1QC / P02747 / complement C1q C chain  / complex
 ENSG00000173372 C1QA / P02745 / complement C1q A chain  / complex
 ENSG00000211893 IGHG2 / P01859 / immunoglobulin heavy constant gamma 2 (G2m marker)  / complex
 ENSG00000211896 IGHG1 / P01857 / immunoglobulin heavy constant gamma 1 (G1m marker)  / complex
 ENSG00000211892 IGHG4 / P01861 / immunoglobulin heavy constant gamma 4 (G4m marker)  / complex
 ENSG00000224389 C4B / P0C0L5 / complement C4B (Chido blood group)  / reaction
 ENSG00000166278 C2 / P06681 / complement C2  / reaction
 ENSG00000244731 C4A / P0C0L4 / complement C4A (Rodgers blood group)  / reaction
 ENSG00000159403 C1R / P00736 / complement C1r  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr