ENSG00000028137


Homo sapiens

Features
Gene ID: ENSG00000028137
  
Biological name :TNFRSF1B
  
Synonyms : P20333 / TNF receptor superfamily member 1B / TNFRSF1B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p36.22
Gene start: 12167003
Gene end: 12209228
  
Corresponding Affymetrix probe sets: 203508_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000440425
Ensembl peptide - ENSP00000365435
NCBI entrez gene - 7133     See in Manteia.
OMIM - 191191
RefSeq - XM_017002215
RefSeq - NM_001066
RefSeq - XM_011542063
RefSeq - XM_017002211
RefSeq - XM_017002214
RefSeq - XM_011542060
RefSeq Peptide - NP_001057
swissprot - P20333
swissprot - B5A977
Ensembl - ENSG00000028137
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnfrsf1bENSDARG00000070165Danio rerio
 TNFRSF1BENSGALG00000034213Gallus gallus
 P25119ENSMUSG00000028599Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O75509 / TNFRSF21 / TNF receptor superfamily member 21ENSG0000014607223
Q9Y6Q6 / TNFRSF11A / TNF receptor superfamily member 11aENSG0000014165521
O00300 / TNFRSF11B / TNF receptor superfamily member 11bENSG0000016476120
LTBR / P36941 / lymphotoxin beta receptorENSG0000011132118
O95407 / TNFRSF6B / TNF receptor superfamily member 6bENSG0000024350916
CD40 / P25942 / CD40 moleculeENSG0000010101716
Q92956 / TNFRSF14 / TNF receptor superfamily member 14ENSG0000015787315


Protein motifs (from Interpro)
Interpro ID Name
 IPR001368  TNFR/NGFR cysteine-rich region
 IPR020411  Tumour necrosis factor receptor 1B
 IPR033996  Tumor necrosis factor receptor 1B, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0006954 inflammatory response IBA
 biological_processGO:0006955 immune response IEA
 biological_processGO:0007166 cell surface receptor signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0007568 aging IEA
 biological_processGO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway TAS
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0033209 tumor necrosis factor-mediated signaling pathway TAS
 biological_processGO:0042127 regulation of cell proliferation IBA
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IBA
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0050728 negative regulation of inflammatory response IEA
 biological_processGO:0050779 RNA destabilization IEA
 biological_processGO:0051044 positive regulation of membrane protein ectodomain proteolysis IMP
 biological_processGO:0071222 cellular response to lipopolysaccharide IMP
 biological_processGO:0071363 cellular response to growth factor stimulus IEA
 biological_processGO:0097190 apoptotic signaling pathway IBA
 biological_processGO:0097191 extrinsic apoptotic signaling pathway IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0035579 specific granule membrane TAS
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043196 varicosity IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0005031 tumor necrosis factor-activated receptor activity TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI


Pathways (from Reactome)
Pathway description
TNFR2 non-canonical NF-kB pathway
TNFs bind their physiological receptors
Interleukin-10 signaling
Interleukin-4 and Interleukin-13 signaling
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000492 Abnormality of the eyelid 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000958 Dry skin 
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
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 HP:0001029 Poikiloderma 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002103 Abnormality of the pleura "An abnormality of the pleura, the thin, transparent membrane which covers the lungs and lines the inside of the chest walls." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002721 Immunodeficiency 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0004332 Abnormality of lymphocytes 
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 HP:0005561 Generalized abnormality of the bone marrow 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0008069 Neoplasia of the skin 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010701 Abnormal immunoglobulin level "An abnormal deviation from normal levels of immunoglobulins in blood." [HPO:probinson]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0012192 Cutaneous T-cell lymphoma "A type of T-cell lymphoma that exhibits malignant infiltration of the skin." [HPO:probinson]
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 HP:0100725 Lichenification "Thickening and hardenining of the epidermis seen with exaggeration of normal skin lines." [HPO:probinson]
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 HP:0100758 Gangrene "A serious and potentially life-threatening condition that arises when a considerable mass of body tissue dies (necrosis)." [ISBN:9780781770873]
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 HP:0200035 skin plaques "A broad papule, or confluence of papules equal to or greater than 10 mm. Has also been defined as an elevated, plateau-like lesion that is greater in its diameter than in its depth." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000006062 Q99558 / MAP3K14 / mitogen-activated protein kinase kinase kinase 14  / complex / reaction
 ENSG00000131323 TRAF3 / Q13114 / TNF receptor associated factor 3  / complex / reaction
 ENSG00000110330 BIRC2 / Q13490 / baculoviral IAP repeat containing 2  / complex / reaction
 ENSG00000226979 LTA / P01374 / lymphotoxin alpha  / reaction / complex
 ENSG00000023445 BIRC3 / Q13489 / baculoviral IAP repeat containing 3  / reaction / complex
 ENSG00000028137 P20333 / TNFRSF1B / TNF receptor superfamily member 1B  / complex / reaction
 ENSG00000127191 TRAF2 / Q12933 / TNF receptor associated factor 2  / complex / reaction
 ENSG00000232810 TNF / P01375 / tumor necrosis factor  / complex / reaction






 

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