ENSG00000099246


Homo sapiens

Features
Gene ID: ENSG00000099246
  
Biological name :RAB18
  
Synonyms : Q9NP72 / RAB18 / RAB18, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: p12.1
Gene start: 27504174
Gene end: 27542237
  
Corresponding Affymetrix probe sets: 223336_s_at (Human Genome U133 Plus 2.0 Array)   224377_s_at (Human Genome U133 Plus 2.0 Array)   224787_s_at (Human Genome U133 Plus 2.0 Array)   229398_at (Human Genome U133 Plus 2.0 Array)   239637_at (Human Genome U133 Plus 2.0 Array)   243496_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000478479
Ensembl peptide - ENSP00000439321
Ensembl peptide - ENSP00000483927
Ensembl peptide - ENSP00000349415
Ensembl peptide - ENSP00000364960
Ensembl peptide - ENSP00000407872
NCBI entrez gene - 22931     See in Manteia.
OMIM - 602207
RefSeq - NM_001256411
RefSeq - NM_001256410
RefSeq - NM_001256412
RefSeq - NM_001256415
RefSeq - NM_021252
RefSeq Peptide - NP_067075
RefSeq Peptide - NP_001243339
RefSeq Peptide - NP_001243340
RefSeq Peptide - NP_001243341
RefSeq Peptide - NP_001243344
swissprot - Q9NP72
swissprot - H0Y6T8
swissprot - Q5W0J0
swissprot - A0A087X163
Ensembl - ENSG00000099246
  
Related genetic diseases (OMIM): 614222 - Warburg micro syndrome 3, 614222
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q6DHC1ENSDARG00000098344Danio rerio
 rab18aENSDARG00000055291Danio rerio
 RAB18ENSGALG00000007435Gallus gallus
 Rab18ENSMUSG00000073639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB2A / P61019 / RAB2A, member RAS oncogene familyENSG0000010438839
RAB2B / Q8WUD1 / RAB2B, member RAS oncogene familyENSG0000012947237
Q15907 / RAB11B / RAB11B, member RAS oncogene familyENSG0000018523636
RAB14 / P61106 / RAB14, member RAS oncogene familyENSG0000011939635
P62491 / RAB11A / RAB11A, member RAS oncogene familyENSG0000010376935
RAB4A / P20338 / RAB4A, member RAS oncogene familyENSG0000016811834
RAB25 / P57735 / RAB25, member RAS oncogene familyENSG0000013269834
RAB4B-EGLN2 / RAB4B-EGLN2 readthrough (NMD candidate)ENSG0000017157033
RAB4B / P61018 / RAB4B, member RAS oncogene familyENSG0000016757833
Q14964 / RAB39A / RAB39A, member RAS oncogene familyENSG0000017933132
Q96DA2 / RAB39B / RAB39B, member RAS oncogene familyENSG0000015596131
RAB42 / Q8N4Z0 / RAB42, member RAS oncogene familyENSG0000018806010


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR025662  Sigma-54 interaction domain, ATP-binding site 1
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development ISS
 biological_processGO:0007264 small GTPase mediated signal transduction NAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007420 brain development ISS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0034389 lipid particle organization IMP
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0051170 import into nucleus IEA
 biological_processGO:0071786 endoplasmic reticulum tubular network organization IMP
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030667 secretory granule membrane TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071782 endoplasmic reticulum tubular network IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0019003 GDP binding IDA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation
COPI-independent Golgi-to-ER retrograde traffic
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000054 Micropenis 
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 HP:0000060 Hypoplastic clitoris 
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 HP:0000064 Hypoplastic labia minora 
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 HP:0000126 Hydronephrosis 
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 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000322 Short philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000400 Large ears 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000480 Retinal coloboma 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000594 Shallow anterior chamber 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000649 Abnormality of vision evoked potentials 
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 HP:0000823 Delayed puberty 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001371 Contractures 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002808 Kyphosis 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005484 Microcephaly, postnatal 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008734 Decreased testicular size 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008897 Growth retardation, progressive 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011448 Ankle clonus "Clonus is an involuntary tendon reflex that causes repeated flexion and extension of the foot. Ankle clonus is tested by rapidly flexing the foot upward." [HPO:probinson]
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 HP:0100542 Abnormal localization of kidneys 
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000118873 Q9H2M9 / RAB3GAP2 / RAB3 GTPase activating non-catalytic protein subunit 2  / reaction / complex
 ENSG00000115839 Q15042 / RAB3GAP1 / RAB3 GTPase activating protein catalytic subunit 1  / reaction / complex
 ENSG00000203879 GDI1 / P31150 / GDP dissociation inhibitor 1  / complex
 ENSG00000203668 CHML / P26374 / CHM like, Rab escort protein 2  / complex
 ENSG00000057608 GDI2 / P50395 / GDP dissociation inhibitor 2  / complex
 ENSG00000188419 CHM / P24386 / CHM, Rab escort protein 1  / complex






 

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