ENSG00000108379


Homo sapiens

Features
Gene ID: ENSG00000108379
  
Biological name :WNT3
  
Synonyms : P56703 / WNT3 / Wnt family member 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q21.32
Gene start: 46762506
Gene end: 46833154
  
Corresponding Affymetrix probe sets: 221455_s_at (Human Genome U133 Plus 2.0 Array)   229103_at (Human Genome U133 Plus 2.0 Array)   231743_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000225512
NCBI entrez gene - 7473     See in Manteia.
OMIM - 165330
RefSeq - NM_030753
RefSeq Peptide - NP_110380
swissprot - P56703
Ensembl - ENSG00000108379
  
Related genetic diseases (OMIM): 273395 - ?Tetra-amelia syndrome 1, 273395
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wnt3ENSDARG00000038990Danio rerio
 WNT3ENSGALG00000001079Gallus gallus
 Wnt3ENSMUSG00000000125Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WNT3A / P56704 / Wnt family member 3AENSG0000015434284
WNT4 / P56705 / Wnt family member 4ENSG0000016255247
WNT5B / Q9H1J7 / Wnt family member 5BENSG0000011118645
WNT5A / P41221 / Wnt family member 5AENSG0000011425145
WNT1 / P04628 / Wnt family member 1ENSG0000012508443
WNT2 / P09544 / Wnt family member 2ENSG0000010598943
WNT2B / Q93097 / Wnt family member 2BENSG0000013424543
WNT7B / P56706 / Wnt family member 7BENSG0000018806443
WNT7A / O00755 / Wnt family member 7AENSG0000015476443
WNT16 / Q9UBV4 / Wnt family member 16ENSG0000000274540
WNT6 / Q9Y6F9 / Wnt family member 6ENSG0000011559640
WNT11 / O96014 / Wnt family member 11ENSG0000008574135


Protein motifs (from Interpro)
Interpro ID Name
 IPR005817  Wnt
 IPR009141  Wnt-3 protein
 IPR018161  Wnt protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis IMP
 biological_processGO:0001707 mesoderm formation IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007276 gamete generation IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0009948 anterior/posterior axis specification IEA
 biological_processGO:0009950 dorsal/ventral axis specification IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0016055 Wnt signaling pathway TAS
 biological_processGO:0030177 positive regulation of Wnt signaling pathway IEA
 biological_processGO:0030182 neuron differentiation ISS
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0044338 canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation IMP
 biological_processGO:0044339 canonical Wnt signaling pathway involved in osteoblast differentiation IMP
 biological_processGO:0045165 cell fate commitment IBA
 biological_processGO:0048646 anatomical structure formation involved in morphogenesis IEA
 biological_processGO:0048697 positive regulation of collateral sprouting in absence of injury IEA
 biological_processGO:0048843 negative regulation of axon extension involved in axon guidance IEA
 biological_processGO:0050767 regulation of neurogenesis IMP
 biological_processGO:0060064 Spemann organizer formation at the anterior end of the primitive streak IEA
 biological_processGO:0060070 canonical Wnt signaling pathway IEA
 biological_processGO:0060173 limb development IEA
 biological_processGO:0060174 limb bud formation IMP
 biological_processGO:0060323 head morphogenesis IEA
 biological_processGO:0061180 mammary gland epithelium development IEP
 biological_processGO:0071300 cellular response to retinoic acid ISS
 biological_processGO:0072089 stem cell proliferation IMP
 biological_processGO:1904954 canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation IMP
 biological_processGO:1905474 canonical Wnt signaling pathway involved in stem cell proliferation IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005796 Golgi lumen TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0030666 endocytic vesicle membrane TAS
 cellular_componentGO:0070062 extracellular exosome TAS
 cellular_componentGO:1990909 Wnt signalosome NAS
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005109 frizzled binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0048018 receptor ligand activity IDA


Pathways (from Reactome)
Pathway description
TCF dependent signaling in response to WNT
WNT ligand biogenesis and trafficking
Class B/2 (Secretin family receptors)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000042 Absent external genitalia 
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 HP:0000068 Urethral atresia 
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 HP:0000104 Renal agenesis 
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 HP:0000148 Vaginal atresia 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000238 Hydrocephalus 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000648 Optic atrophy 
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 HP:0000775 Abnormality of the diaphragm "Any abnormality of the diaphragm." [HPO:curators]
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 HP:0000921 Missing ribs 
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 HP:0001195 Single umbilical artery 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001543 Gastroschisis 
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 HP:0001561 Polyhydramnios 
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 HP:0001600 Abnormality of the larynx 
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 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002101 Abnormal lung lobation "Defects in the formation of pulmonary lobules." [HPO:curators]
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 HP:0002777 Tracheal stenosis 
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 HP:0003057 Tetraamelia "`Amelia` (HP:0009827) of all four limbs." [HPO:sdoelken]
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 HP:0005316 Peripheral pulmonary vessel aplasia 
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 HP:0006703 Aplasia/Hypoplasia of the lungs 
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 HP:0006709 Aplasia/Hypoplasia of the nipples 
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 HP:0008551 Underdeveloped ears 
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 HP:0008697 Rudimentary fallopian tubes 
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 HP:0008839 Hypoplastic pelvis 
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 HP:0009103 Aplasia/Hypoplasia involving the pelvis 
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 HP:0009924 Aplasia/Hypoplasia involving the nose "Underdevelopment or absence of the nose or parts thereof." [HPO:curators]
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 HP:0009932 Single nostril "The presence of only a single `nostril` (FMA:59645)." [pmid:19152422]
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 HP:0011743 Adrenal gland agenesis "Absent development of the adrenal gland." [DDD:spark]
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 HP:0100569 Abnormality of ossification/mineralisation of vertebrae 
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 HP:0100842 Septo-optic dysplasia "Underdevelopment of the optic nerve and absence of the septum pellucidum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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