ENSG00000162552


Homo sapiens

Features
Gene ID: ENSG00000162552
  
Biological name :WNT4
  
Synonyms : P56705 / WNT4 / Wnt family member 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.12
Gene start: 22117305
Gene end: 22143969
  
Corresponding Affymetrix probe sets: 1556689_a_at (Human Genome U133 Plus 2.0 Array)   208606_s_at (Human Genome U133 Plus 2.0 Array)   230751_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000403334
Ensembl peptide - ENSP00000290167
Ensembl peptide - ENSP00000388925
NCBI entrez gene - 54361     See in Manteia.
OMIM - 603490
RefSeq - XM_011541599
RefSeq - NM_030761
RefSeq - XM_011541597
RefSeq - XM_011541598
RefSeq Peptide - NP_110388
swissprot - P56705
swissprot - H0Y663
swissprot - B1AJZ6
Ensembl - ENSG00000162552
  
Related genetic diseases (OMIM): 158330 - Mullerian aplasia and hyperandrogenism, 158330
  611812 - ?SERKAL syndrome, 611812
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wnt4aENSDARG00000071208Danio rerio
 WNT4ENSGALG00000041708Gallus gallus
 Wnt4ENSMUSG00000036856Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WNT3 / P56703 / Wnt family member 3ENSG0000010837948
WNT5A / P41221 / Wnt family member 5AENSG0000011425148
WNT7B / P56706 / Wnt family member 7BENSG0000018806446
WNT2B / Q93097 / Wnt family member 2BENSG0000013424546
WNT3A / P56704 / Wnt family member 3AENSG0000015434246
WNT5B / Q9H1J7 / Wnt family member 5BENSG0000011118646
WNT7A / O00755 / Wnt family member 7AENSG0000015476445
WNT2 / P09544 / Wnt family member 2ENSG0000010598945
WNT1 / P04628 / Wnt family member 1ENSG0000012508445
WNT6 / Q9Y6F9 / Wnt family member 6ENSG0000011559643
WNT16 / Q9UBV4 / Wnt family member 16ENSG0000000274540
WNT11 / O96014 / Wnt family member 11ENSG0000008574138


Protein motifs (from Interpro)
Interpro ID Name
 IPR005817  Wnt
 IPR009142  Wnt-4 protein
 IPR018161  Wnt protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001656 metanephros development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0001822 kidney development IEP
 biological_processGO:0001823 mesonephros development IEA
 biological_processGO:0001837 epithelial to mesenchymal transition IEP
 biological_processGO:0001838 embryonic epithelial tube formation IEA
 biological_processGO:0001889 liver development IEP
 biological_processGO:0006702 androgen biosynthetic process IDA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007276 gamete generation IEA
 biological_processGO:0007548 sex differentiation IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0008585 female gonad development IEA
 biological_processGO:0009267 cellular response to starvation IEA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0010894 negative regulation of steroid biosynthetic process IDA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0022407 regulation of cell-cell adhesion IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030182 neuron differentiation IBA
 biological_processGO:0030237 female sex determination IMP
 biological_processGO:0030325 adrenal gland development IEP
 biological_processGO:0030336 negative regulation of cell migration IEA
 biological_processGO:0030501 positive regulation of bone mineralization IDA
 biological_processGO:0032349 positive regulation of aldosterone biosynthetic process IDA
 biological_processGO:0032967 positive regulation of collagen biosynthetic process IDA
 biological_processGO:0033077 T cell differentiation in thymus IEA
 biological_processGO:0033080 immature T cell proliferation in thymus IEA
 biological_processGO:0035239 tube morphogenesis IEA
 biological_processGO:0035567 non-canonical Wnt signaling pathway IEA
 biological_processGO:0038030 non-canonical Wnt signaling pathway via MAPK cascade IDA
 biological_processGO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway IEA
 biological_processGO:0042445 hormone metabolic process IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045596 negative regulation of cell differentiation IEA
 biological_processGO:0045669 positive regulation of osteoblast differentiation IDA
 biological_processGO:0045836 positive regulation of meiotic nuclear division IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0048599 oocyte development IEA
 biological_processGO:0048754 branching morphogenesis of an epithelial tube IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0051145 smooth muscle cell differentiation IEA
 biological_processGO:0051496 positive regulation of stress fiber assembly IEA
 biological_processGO:0051894 positive regulation of focal adhesion assembly IEA
 biological_processGO:0060070 canonical Wnt signaling pathway IEA
 biological_processGO:0060126 somatotropin secreting cell differentiation IEA
 biological_processGO:0060129 thyroid-stimulating hormone-secreting cell differentiation IEA
 biological_processGO:0060231 mesenchymal to epithelial transition IEA
 biological_processGO:0060748 tertiary branching involved in mammary gland duct morphogenesis IEA
 biological_processGO:0060993 kidney morphogenesis IEA
 biological_processGO:0061045 negative regulation of wound healing IEA
 biological_processGO:0061180 mammary gland epithelium development IEP
 biological_processGO:0061184 positive regulation of dermatome development IDA
 biological_processGO:0061205 paramesonephric duct development IEA
 biological_processGO:0061369 negative regulation of testicular blood vessel morphogenesis IMP
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IEP
 biological_processGO:0072006 nephron development IEA
 biological_processGO:0072033 renal vesicle formation IEA
 biological_processGO:0072034 renal vesicle induction IEA
 biological_processGO:0072162 metanephric mesenchymal cell differentiation NAS
 biological_processGO:0072164 mesonephric tubule development IEA
 biological_processGO:0072174 metanephric tubule formation IEA
 biological_processGO:0072210 metanephric nephron development IEA
 biological_processGO:0072273 metanephric nephron morphogenesis IEA
 biological_processGO:0072659 protein localization to plasma membrane IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IEA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IDA
 biological_processGO:2000019 negative regulation of male gonad development IMP
 biological_processGO:2000066 positive regulation of cortisol biosynthetic process IDA
 biological_processGO:2000225 negative regulation of testosterone biosynthetic process IMP
 biological_processGO:2001234 negative regulation of apoptotic signaling pathway IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005796 Golgi lumen TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0030666 endocytic vesicle membrane TAS
 cellular_componentGO:0070062 extracellular exosome TAS
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005109 frizzled binding IEA
 molecular_functionGO:0048018 receptor ligand activity IC


Pathways (from Reactome)
Pathway description
TCF dependent signaling in response to WNT
WNT ligand biogenesis and trafficking
Class B/2 (Secretin family receptors)
Negative regulation of TCF-dependent signaling by WNT ligand antagonists
PCP/CE pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000013 Hypoplastic uterus 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000104 Renal agenesis 
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 HP:0000122 Unilateral renal agenesis 
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 HP:0000137 Abnormality of the ovaries 
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 HP:0000141 Amenorrhea 
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 HP:0000142 Abnormality of the vagina 
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 HP:0000151 Absent uterus 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000322 Short philtrum 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000470 Short neck 
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 HP:0000574 Thick eyebrows 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000786 Primary amenorrhea 
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 HP:0000834 Abnormality of the adrenal glands "Abnormality of the adrenal glands, i.e., of the endocrine glands located at the top of the kindneys." [HPO:curators]
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 HP:0000914 Shield chest 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001061 Acne 
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 HP:0001156 Brachydactyly 
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 HP:0001510 Growth retardation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001562 Oligohydramnios 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002292 Frontal balding (male pattern baldness) 
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 HP:0002967 Cubitus valgus 
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 HP:0003250 Absent vagina 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004415 Pulmonary artery stenosis 
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 HP:0004794 Malrotation of small bowel 
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 HP:0005343 Hypoplastic bladder 
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 HP:0005944 Bilateral lung agenesis 
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 HP:0008655 Absent or rudimentary fallopian tubes 
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 HP:0009890 High frontal hairline "An abnormally high hairline (border between forehead and scalp hair)." [HPO:curators]
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 HP:0009937 Facial hirsutism "Excess facial hair." [HPO:curators]
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 HP:0011743 Adrenal gland agenesis "Absent development of the adrenal gland." [DDD:spark]
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 HP:0012245 Sex reversal "Development of the reproductive system is inconsistent with the chromosomal sex." [HPO:probinson, MP:0005652]
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 HP:0012861 Ovotestis "A gonad that contains both ovarian follicles and testicular tubular elements." [HPO:probinson]
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 HP:0030088 Increased testosterone "An elevated circulating testosterone level in the blood." []
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 HP:0410030 Cleft lip "A gap in the lip or lips." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000156076 WIF1 / Q9Y5W5 / WNT inhibitory factor 1  / reaction / complex






 

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