ENSG00000143858


Homo sapiens

Features
Gene ID: ENSG00000143858
  
Biological name :SYT2
  
Synonyms : Q8N9I0 / synaptotagmin 2 / SYT2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q32.1
Gene start: 202590596
Gene end: 202710417
  
Corresponding Affymetrix probe sets: 214903_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000356237
Ensembl peptide - ENSP00000356236
NCBI entrez gene - 127833     See in Manteia.
OMIM - 600104
RefSeq - XM_017000313
RefSeq - NM_001136504
RefSeq - NM_177402
RefSeq - XM_017000309
RefSeq - XM_017000310
RefSeq - XM_017000311
RefSeq - XM_017000312
RefSeq - XM_011509192
RefSeq Peptide - NP_001129976
RefSeq Peptide - NP_796376
swissprot - Q8N9I0
swissprot - A0A024R9B3
Ensembl - ENSG00000143858
  
Related genetic diseases (OMIM): 616040 - Myasthenic syndrome, congenital, 7, presynaptic, 616040
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYT2ENSDARG00000014169Danio rerio
 syt2aENSDARG00000025206Danio rerio
 SYT2ENSGALG00000026033Gallus gallus
 Syt2ENSMUSG00000026452Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYT1 / P21579 / synaptotagmin 1ENSG0000006771577
SYT5 / O00445 / synaptotagmin 5ENSG0000012999054
SYT8 / Q8NBV8 / synaptotagmin 8ENSG0000014904338
SYT10 / Q6XYQ8 / synaptotagmin 10ENSG0000011097537
SYT3 / Q9BQG1 / synaptotagmin 3ENSG0000021302336
SYT9 / Q86SS6 / synaptotagmin 9ENSG0000017074335
SYT7 / O43581 / synaptotagmin 7ENSG0000001134735
SYT6 / Q5T7P8 / synaptotagmin 6ENSG0000013420735
SYT4 / Q9H2B2 / synaptotagmin 4ENSG0000013287232
SYT11 / Q9BT88 / synaptotagmin 11ENSG0000013271830


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001565  Synaptotagmin
 IPR015428  Synaptotagmin 1/2
 IPR035892  C2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0007269 neurotransmitter secretion IEA
 biological_processGO:0017158 regulation of calcium ion-dependent exocytosis IBA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0048488 synaptic vesicle endocytosis IBA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IBA
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:1903861 positive regulation of dendrite extension IDA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030665 clathrin-coated vesicle membrane TAS
 cellular_componentGO:0030672 synaptic vesicle membrane TAS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0042584 chromaffin granule membrane IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005544 calcium-dependent phospholipid binding IBA
 molecular_functionGO:0019905 syntaxin binding IBA
 molecular_functionGO:0030276 clathrin binding IBA
 molecular_functionGO:0043533 inositol 1,3,4,5 tetrakisphosphate binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Toxicity of botulinum toxin type B (BoNT/B)
Neurexins and neuroligins
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001765 Hammer toes 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000140022 STON2 / Q8WXE9 / stonin 2  / reaction / complex
 ENSG00000143858 SYT2 / Q8N9I0 / synaptotagmin 2  / complex






 

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