ENSG00000146938


Homo sapiens

Features
Gene ID: ENSG00000146938
  
Biological name :NLGN4X
  
Synonyms : neuroligin 4, X-linked / NLGN4X / Q8N0W4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: p22.31
Gene start: 5840637
Gene end: 6228863
  
Corresponding Affymetrix probe sets: 1554689_a_at (Human Genome U133 Plus 2.0 Array)   221933_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000439203
Ensembl peptide - ENSP00000370485
Ensembl peptide - ENSP00000493620
Ensembl peptide - ENSP00000495194
Ensembl peptide - ENSP00000275857
Ensembl peptide - ENSP00000370482
Ensembl peptide - ENSP00000370483
NCBI entrez gene - 57502     See in Manteia.
OMIM - 300427
RefSeq - XM_017029693
RefSeq - XM_005274566
RefSeq - XM_006724504
RefSeq - XM_011545547
RefSeq - XM_011545548
RefSeq - XM_017029690
RefSeq - XM_017029691
RefSeq - XM_017029692
RefSeq - NM_001282145
RefSeq - NM_001282146
RefSeq - NM_020742
RefSeq - NM_181332
RefSeq - XM_005274564
RefSeq - XM_005274565
RefSeq Peptide - NP_851849
RefSeq Peptide - NP_001269074
RefSeq Peptide - NP_001269075
RefSeq Peptide - NP_065793
swissprot - Q8N0W4
swissprot - A0A0A0MTH0
swissprot - A0A024RBV0
Ensembl - ENSG00000146938
  
Related genetic diseases (OMIM): 300495 - Mental retardation, X-linked, 300495
  300497 - {Asperger syndrome susceptibility, X-linked 2}, 300497
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nlgn4aENSDARG00000079455Danio rerio
 nlgn4bENSDARG00000077761Danio rerio
 NLGN4LENSGALG00000016628Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NLGN4Y / Q8NFZ3 / neuroligin 4, Y-linkedENSG0000016524698
NLGN1 / Q8N2Q7 / neuroligin 1ENSG0000016976073
NLGN3 / Q9NZ94 / neuroligin 3ENSG0000019633873
NLGN2 / Q8NFZ4 / neuroligin 2ENSG0000016999263
ACHE / P22303 / acetylcholinesterase (Cartwright blood group)ENSG0000008708525
CEL / carboxyl ester lipaseENSG0000017083525
BCHE / P06276 / butyrylcholinesteraseENSG0000011420025
CES1 / P23141 / carboxylesterase 1ENSG0000019884822
CES5A / Q6NT32 / carboxylesterase 5AENSG0000015939822
CES2 / O00748 / carboxylesterase 2ENSG0000017283122
CES3 / Q6UWW8 / carboxylesterase 3ENSG0000017282821
CES4A / Q5XG92 / carboxylesterase 4AENSG0000017282417


Protein motifs (from Interpro)
Interpro ID Name
 IPR000460  Neuroligin
 IPR002018  Carboxylesterase, type B
 IPR019819  Carboxylesterase type B, conserved site
 IPR029058  Alpha/Beta hydrolase fold
 IPR030025  Neuroligin 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003360 brainstem development ISS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007158 neuron cell-cell adhesion TAS
 biological_processGO:0007612 learning IMP
 biological_processGO:0021549 cerebellum development ISS
 biological_processGO:0030182 neuron differentiation NAS
 biological_processGO:0030534 adult behavior IMP
 biological_processGO:0035176 social behavior IMP
 biological_processGO:0035265 organ growth ISS
 biological_processGO:0045216 cell-cell junction organization NAS
 biological_processGO:0048488 synaptic vesicle endocytosis IBA
 biological_processGO:0050808 synapse organization NAS
 biological_processGO:0071625 vocalization behavior ISS
 biological_processGO:0090394 negative regulation of excitatory postsynaptic potential IDA
 biological_processGO:0097104 postsynaptic membrane assembly IBA
 biological_processGO:0097105 presynaptic membrane assembly IDA
 biological_processGO:0099054 presynapse assembly TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane NAS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0045202 synapse ISS
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:0060076 excitatory synapse IDA
 cellular_componentGO:0089717 spanning component of membrane TAS
 cellular_componentGO:0098983 symmetric, GABA-ergic, inhibitory synapse TAS
 cellular_componentGO:0098985 asymmetric, glutamatergic, excitatory synapse TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031404 chloride ion binding IDA
 molecular_functionGO:0042043 neurexin family protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0050839 cell adhesion molecule binding TAS
 molecular_functionGO:0052689 carboxylic ester hydrolase activity IBA
 molecular_functionGO:0097110 scaffold protein binding IPI


Pathways (from Reactome)
Pathway description
Neurexins and neuroligins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000717 Autism 
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 HP:0000721 Lack of spontaneous play 
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 HP:0000723 Restrictive behaviour, interests, and activities 
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 HP:0000732 Inflexible adherence to routines or rituals 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000750 Impaired language development 
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 HP:0000758 Impaired use of nonverbal behaviors, such as eye-to-eye gaze, facial expression, body posture, and gestures 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001426 Multifactorial 
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 HP:0002332 Lack of peer relationships 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0003144 Increased serum serotonin in 25% 
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 HP:0003745 Sporadic 
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000146938 NLGN4X / Q8N0W4 / neuroligin 4, X-linked  / complex






 

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contact: otassy@igbmc.fr