ENSDARG00000015955


Danio rerio

Features
Gene ID: ENSDARG00000015955
  
Biological name :cldnc
  
Synonyms : claudin c / cldnc
  
Possible biological names infered from orthology : claudin 4 / CLDN4 / O14493 / O35054
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 25754268
Gene end: 25756119
  
Corresponding Affymetrix probe sets: Dr.12596.1.S1_at (Zebrafish Array)   NM_131764_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000002797
NCBI entrez gene - 81582     See in Manteia.
RefSeq - NM_131764
RefSeq Peptide - NP_571839
swissprot - Q90XR2
ZFIN ID - ZDB-GENE-010328-3
Ensembl - ENSDARG00000015955
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLDN4ENSG00000189143Homo sapiens
 Cldn4ENSMUSG00000047501Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cldnh / claudin h / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006950360
cldna / claudin a / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006988859
cldnb / claudin b / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000954458
cldnd / Q9YH91 / claudin d / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000658057
cldne / claudin e / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000004312857
cldn5a / claudin 5a / CLDN5* / O00501* / O54942* / claudin 5*ENSDARG0000004371656
cldn5b / claudin 5b / CLDN5* / O00501* / O54942* / claudin 5*ENSDARG0000001405954
zgc:112437 / CLDN4 (1 of many) / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000921553
cldng / Q9YH90 / claudin g / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000370152
cldnk / claudin kENSDARG0000004235748
cldnf / claudin f / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000004313346
cldnj / claudin jENSDARG0000005888044
zgc:136892 / CLDN4 (1 of many) / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006950544
cldn2 / claudin 2 / O88552* / P57739*ENSDARG0000004438740
Q9YH92 / cldn7b / claudin 7b / CLDN7* / Q9Z261* / O95471* / claudin 7*ENSDARG0000001404739
Q6DHP1 / cldn7a / claudin 7a / CLDN7* / Q9Z261* / O95471* / claudin 7*ENSDARG0000003637639
cldn17 / claudin 17 / CLDN8* / P56748* / claudin 8*ENSDARG0000009995038
zgc:110333 / CLDN8 (1 of many) / CLDN8* / P56748* / claudin 8*ENSDARG0000004062838
cldn19 / claudin 19 / Q8N6F1* / Q9ET38*ENSDARG0000004456937
cldn1 / claudin 1 / O95832*ENSDARG0000004004537


Protein motifs (from Interpro)
Interpro ID Name
 IPR003549  Claudin-3
 IPR004031  PMP-22/EMP/MP20/Claudin superfamily
 IPR006187  Claudin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031101 fin regeneration IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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