ENSDARG00000043133


Danio rerio

Features
Gene ID: ENSDARG00000043133
  
Biological name :cldnf
  
Synonyms : claudin f / cldnf
  
Possible biological names infered from orthology : claudin 4 / CLDN4 / O14493 / O35054
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 2650787
Gene end: 2652640
  
Corresponding Affymetrix probe sets: Dr.1056.1.S1_at (Zebrafish Array)   NM_131766_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118625
NCBI entrez gene - 81585     See in Manteia.
RefSeq - NM_131766
RefSeq Peptide - NP_571841
swissprot - F1QB03
ZFIN ID - ZDB-GENE-010328-6
Ensembl - ENSDARG00000043133
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLDN4ENSG00000189143Homo sapiens
 Cldn4ENSMUSG00000047501Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cldne / claudin e / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000004312845
cldnd / Q9YH91 / claudin d / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000658045
cldna / claudin a / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006988844
cldnc / claudin c / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000001595543
cldnb / claudin b / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000954443
cldnh / claudin h / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006950342
cldn5b / claudin 5b / CLDN5* / O00501* / O54942* / claudin 5*ENSDARG0000001405942
cldn5a / claudin 5a / CLDN5* / O00501* / O54942* / claudin 5*ENSDARG0000004371640
zgc:112437 / CLDN4 (1 of many) / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000921539
cldng / Q9YH90 / claudin g / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000370139
zgc:136892 / CLDN4 (1 of many) / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006950537
cldnk / claudin kENSDARG0000004235737
cldnj / claudin jENSDARG0000005888036
cldn17 / claudin 17 / CLDN8* / P56748* / claudin 8*ENSDARG0000009995032
cldn19 / claudin 19 / Q8N6F1* / Q9ET38*ENSDARG0000004456931
zgc:110333 / CLDN8 (1 of many) / CLDN8* / P56748* / claudin 8*ENSDARG0000004062831
cldn2 / claudin 2 / O88552* / P57739*ENSDARG0000004438730
cldn1 / claudin 1 / O95832*ENSDARG0000004004529
Q6DHP1 / cldn7a / claudin 7a / CLDN7* / Q9Z261* / O95471* / claudin 7*ENSDARG0000003637629
Q9YH92 / cldn7b / claudin 7b / CLDN7* / Q9Z261* / O95471* / claudin 7*ENSDARG0000001404727


Protein motifs (from Interpro)
Interpro ID Name
 IPR004031  PMP-22/EMP/MP20/Claudin superfamily
 IPR006187  Claudin
 IPR017974  Claudin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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