ENSDARG00000043128


Danio rerio

Features
Gene ID: ENSDARG00000043128
  
Biological name :cldne
  
Synonyms : claudin e / cldne
  
Possible biological names infered from orthology : claudin 4 / CLDN4 / O14493 / O35054
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 2638884
Gene end: 2640966
  
Corresponding Affymetrix probe sets: Dr.3454.1.S1_at (Zebrafish Array)   NM_131765_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000063319
NCBI entrez gene - 81584     See in Manteia.
RefSeq - NM_131765
RefSeq Peptide - NP_571840
swissprot - Q90XR9
ZFIN ID - ZDB-GENE-010328-5
Ensembl - ENSDARG00000043128
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLDN4ENSG00000189143Homo sapiens
 Cldn4ENSMUSG00000047501Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cldnd / Q9YH91 / claudin d / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000658066
cldnb / claudin b / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000954465
cldnh / claudin h / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006950363
cldna / claudin a / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006988861
cldnc / claudin c / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000001595560
zgc:112437 / CLDN4 (1 of many) / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000921559
cldng / Q9YH90 / claudin g / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000000370158
cldn5a / claudin 5a / CLDN5* / O00501* / O54942* / claudin 5*ENSDARG0000004371656
cldn5b / claudin 5b / CLDN5* / O00501* / O54942* / claudin 5*ENSDARG0000001405954
cldnk / claudin kENSDARG0000004235753
cldnf / claudin f / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000004313351
zgc:136892 / CLDN4 (1 of many) / CLDN4* / O14493* / O35054* / claudin 4*ENSDARG0000006950551
cldnj / claudin jENSDARG0000005888050
cldn17 / claudin 17 / CLDN8* / P56748* / claudin 8*ENSDARG0000009995044
zgc:110333 / CLDN8 (1 of many) / CLDN8* / P56748* / claudin 8*ENSDARG0000004062843
Q9YH92 / cldn7b / claudin 7b / CLDN7* / Q9Z261* / O95471* / claudin 7*ENSDARG0000001404740
cldn1 / claudin 1 / O95832*ENSDARG0000004004538
cldn2 / claudin 2 / O88552* / P57739*ENSDARG0000004438738
Q6DHP1 / cldn7a / claudin 7a / CLDN7* / Q9Z261* / O95471* / claudin 7*ENSDARG0000003637638
cldn19 / claudin 19 / Q8N6F1* / Q9ET38*ENSDARG0000004456937


Protein motifs (from Interpro)
Interpro ID Name
 IPR004031  PMP-22/EMP/MP20/Claudin superfamily
 IPR005411  Claudin-2
 IPR006187  Claudin
 IPR017974  Claudin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000086 EVL EVL anatomical margin scalloped , abnormal
EVL blastoderm cell circular , abnormal
EVL blastoderm cell detached from EVL blastoderm cell, abnormal
EVL anatomical margin disorganized , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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