ENSDARG00000114797


Danio rerio

Features
Gene ID: ENSDARG00000114797
  
Biological name :rab3b
  
Synonyms : rab3b / RAB3B, member RAS oncogene family
  
Possible biological names infered from orthology : P20337 / P62823 / Q96E17 / Q9CZT8 / RAB3C / RAB3C, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 17203752
Gene end: 17213264
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114157
Ensembl peptide - ENSDARP00000154264
NCBI entrez gene - 557482     See in Manteia.
swissprot - Q1L986
ZFIN ID - ZDB-GENE-050208-660
Ensembl - ENSDARG00000114797
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB3BENSGALG00000010567Gallus gallus
 RAB3CENSGALG00000014726Gallus gallus
 RAB3BENSG00000169213Homo sapiens
 RAB3CENSG00000152932Homo sapiens
 Rab3bENSMUSG00000003411Mus musculus
 Rab3cENSMUSG00000021700Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab3ab / RAB3A, member RAS oncogene family, b / RAB3A* / P63011* / P20336* / RAB3A, member RAS oncogene family*ENSDARG0000004383575
rab3da / RAB3D, member RAS oncogene family, a / RAB3D* / P35276* / O95716* / RAB3D, member RAS oncogene family*ENSDARG0000001810775
rab3c / RAB3C, member RAS oncogene familyENSDARG0000001446274
rab3aa / RAB3A, member RAS oncogene family, a / RAB3A* / P63011* / P20336* / RAB3A, member RAS oncogene family*ENSDARG0000005634772
rab3db / RAB3D, member RAS oncogene family, b / RAB3D* / P35276* / O95716* / RAB3D, member RAS oncogene family*ENSDARG0000010153470
rab13 / Q7T3A4 / RAB13, member RAS oncogene family / Q9DD03* / P51153* / Ras-related protein Rab-13 *ENSDARG0000003477143
rab8a / RAB8A, member RAS oncogene family / P55258* / P61006*ENSDARG0000006792043
rab27a / RAB27A, member RAS oncogene family / P51159*ENSDARG0000010393542
rab10 / RAB10, member RAS oncogene family / P61026*ENSDARG0000004610642
rab8b / RAB8B, member RAS oncogene family / P61028* / Q92930*ENSDARG0000006862841
megf8 / multiple EGF-like-domains 8ENSDARG0000010393441
rab12 / RAB12, member RAS oncogene family / Q6IQ22*ENSDARG0000008942840
rab15 / RAB15, member RAS oncogene family / P59190*ENSDARG0000002648438
rab27b / RAB27B, member RAS oncogene family / O00194* / Q99P58*ENSDARG0000008776238
rab44 / RAB44, member RAS oncogene family / Q8CB87* / Ras-related protein Rab-44 *ENSDARG0000002838934
A5WW21 / zgc:162879ENSDARG0000007416332
rasef / RAS and EF-hand domain containing / Q5RI75* / Q8IZ41* / Ras and EF-hand domain-containing protein homolog *ENSDARG0000007625031


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk edematous , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr