ENSG00000077150


Homo sapiens

Features
Gene ID: ENSG00000077150
  
Biological name :NFKB2
  
Synonyms : NFKB2 / nuclear factor kappa B subunit 2 / Q00653
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q24.32
Gene start: 102394110
Gene end: 102402529
  
Corresponding Affymetrix probe sets: 207535_s_at (Human Genome U133 Plus 2.0 Array)   209636_at (Human Genome U133 Plus 2.0 Array)   211524_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358983
Ensembl peptide - ENSP00000470826
Ensembl peptide - ENSP00000471586
Ensembl peptide - ENSP00000189444
Ensembl peptide - ENSP00000410256
NCBI entrez gene - 4791     See in Manteia.
OMIM - 164012
RefSeq - XM_017016278
RefSeq - NM_001077494
RefSeq - NM_001261403
RefSeq - NM_001288724
RefSeq - NM_001322934
RefSeq - NM_001322935
RefSeq - NM_002502
RefSeq - XM_011539830
RefSeq - XM_011539831
RefSeq Peptide - NP_001070962
RefSeq Peptide - NP_001309864
RefSeq Peptide - NP_002493
RefSeq Peptide - NP_001248332
RefSeq Peptide - NP_001275653
RefSeq Peptide - NP_001309863
swissprot - M0R119
swissprot - Q00653
swissprot - M0QZX1
Ensembl - ENSG00000077150
  
Related genetic diseases (OMIM): 615577 - Immunodeficiency, common variable, 10, 615577

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nfkb2ENSDARG00000038687Danio rerio
 NFKB2ENSGALG00000005653Gallus gallus
 Nfkb2ENSMUSG00000025225Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NFKB1 / P19838 / nuclear factor kappa B subunit 1ENSG0000010932044
REL / Q04864 / REL proto-oncogene, NF-kB subunitENSG0000016292419
RELA / Q04206 / RELA proto-oncogene, NF-kB subunitENSG0000017303918
RELB / Q01201 / RELB proto-oncogene, NF-kB subunitENSG0000010485617


Protein motifs (from Interpro)
Interpro ID Name
 IPR000451  NF-kappa-B/Dorsal
 IPR000488  Death domain
 IPR002110  Ankyrin repeat
 IPR002909  IPT domain
 IPR008967  p53-like transcription factor, DNA-binding
 IPR011029  Death-like domain superfamily
 IPR011539  Rel homology domain (RHD), DNA-binding domain
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR020683  Ankyrin repeat-containing domain
 IPR030492  Rel homology domain, conserved site
 IPR032397  Rel homology dimerisation domain
 IPR033926  NFkappaB IPT domain
 IPR036770  Ankyrin repeat-containing domain superfamily
 IPR037059  Rel homology domain (RHD), DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0002268 follicular dendritic cell differentiation IEA
 biological_processGO:0002467 germinal center formation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006954 inflammatory response IBA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007249 I-kappaB kinase/NF-kappaB signaling IBA
 biological_processGO:0007568 aging IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0032481 positive regulation of type I interferon production TAS
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0034097 response to cytokine IBA
 biological_processGO:0038061 NIK/NF-kappaB signaling IBA
 biological_processGO:0045087 innate immune response IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048511 rhythmic process IEA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0033257 Bcl3/NF-kappaB2 complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
RIP-mediated NFkB activation via ZBP1
DEx/H-box helicases activate type I IFN and inflammatory cytokines production
PKMTs methylate histone lysines
TAK1 activates NFkB by phosphorylation and activation of IKKs complex
Interleukin-1 processing
SUMOylation of immune response proteins
IkBA variant leads to EDA-ID
Dectin-1 mediated noncanonical NF-kB signaling
NIK-->noncanonical NF-kB signaling
The NLRP3 inflammasome
TRAF6 mediated NF-kB activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000389 Chronic otitis media 
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 HP:0000403 Recurrent otitis media 
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 HP:0000651 Diplopia "Diplopia is a condition in which a single object is perceived as two images, it is also known as double vision." [HPO:curators]
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000979 Purpura 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001325 Hypoglycemic coma 
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 HP:0001508 Failure to thrive 
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001878 Hemolytic anemia 
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 HP:0001888 Lymphopenia 
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 HP:0001973 Immune thrombocytopenia 
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 HP:0001988 Recurrent hypoglycemic episodes 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002090 Pneumonia 
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 HP:0002091 Restrictive lung disease 
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 HP:0002097 Emphysema 
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 HP:0002099 Asthma "Asthma is characterized by increased responsiveness of the tracheobronchial tree to multiple stimuli, leading to narrowing of the air passages with resultant dyspnea, cough, and wheezing." [HPO:curators]
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 HP:0002110 Bronchiectasis 
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002615 Hypotension 
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 HP:0002633 Vasculitis 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002721 Immunodeficiency 
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 HP:0002829 Arthralgia 
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 HP:0002837 Bronchitis 
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 HP:0002902 Hyponatremia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0002920 Decreased serum ACTH 
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 HP:0003765 Psoriasis 
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 HP:0003828 Variable expressivity 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0005364 Severe viral infections, 
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 HP:0005365 Absent peripheral blood B cells 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0006783 Posterior pharyngeal cleft 
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 HP:0007418 Alopecia totalis 
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 HP:0008163 Plasma cortisol low 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0011108 Recurrent sinusitis "A `recurrent` (PATO:0000427) form of `sinusitis` (HP:0000246)." [HPO:probinson]
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 HP:0011734 Central adrenal insufficiency "A form of adrenal insufficiency related to a lack of ACTH, which leads to a decrease in the production of cortisol by the adrenal glands. Aldosterone production is not usually affected." [DDD:spark]
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 HP:0011735 Adrenocorticotropin (ACTH) deficient adrenal insufficiency "Adrenal insufficiency secondary to a defect in ACTH production." [DDD:spark]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012504 Abnormal size of pituitary gland "A deviation from the normal size of the `pituitary gland` (FMA:13889)." [HPO:probinson]
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 HP:0030349 Decreased circulating androgen level "A reduction in the blood concentration of an androgen, that is, of a steroid hormone that controls development and maintenance of masculine characteristics. The androgens include testosterone and Dehydroepiandrosterone." [HPO:probinson]
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 HP:0030353 Decreased serum insulin-like growth factor 1 "A reduced level of insulin-like growth factor 1 (IGF1) in the blood circulation." [HPO:probinson]
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 HP:0030804 Trachyonychia "Excessive longitudinal ridging that gives the surface of the nail plate a rough appearance. It results from multiple foci of defective keratinization of the proximal nail matrix." [] {comment="HPO:probinson", comment="PMID:26273150"}
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 HP:0100723 Gastrointestinal stroma tumor 
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 HP:0100776 Recurrent pharyngitis "An increased susceptibility to pharyngitis as manifested by a history of recurrent pharyngitis." [HPO:probinson]
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 HP:0100803 Abnormality of the periungual region "An abnormality of the region around the nails of the fingers or toes." [HPO:probinson]
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 HP:0100806 Sepsis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000055130 CUL1 / Q13616 / cullin 1  / reaction / complex
 ENSG00000213341 CHUK / O15111 / conserved helix-loop-helix ubiquitous kinase  / complex / reaction
 ENSG00000072803 FBXW11 / Q9UKB1 / F-box and WD repeat domain containing 11  / complex / reaction
 ENSG00000113558 SKP1 / P63208 / S-phase kinase associated protein 1  / reaction / complex
 ENSG00000006062 Q99558 / MAP3K14 / mitogen-activated protein kinase kinase kinase 14  / reaction / complex
 ENSG00000173039 RELA / Q04206 / RELA proto-oncogene, NF-kB subunit  / complex
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / reaction
 ENSG00000166167 BTRC / Q9Y297 / beta-transducin repeat containing E3 ubiquitin protein ligase  / reaction / complex
 ENSG00000104856 RELB / Q01201 / RELB proto-oncogene, NF-kB subunit  / complex
 ENSG00000100906 NFKBIA / P25963 / NFKB inhibitor alpha  / complex
 ENSG00000103037 SETD6 / Q8TBK2 / SET domain containing 6  / reaction
 ENSG00000104825 NFKBIB / Q15653 / NFKB inhibitor beta  / complex
 ENSG00000104365 IKBKB / O14920 / inhibitor of nuclear factor kappa B kinase subunit beta  / reaction






 

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