ENSG00000078747


Homo sapiens

Features
Gene ID: ENSG00000078747
  
Biological name :ITCH
  
Synonyms : ITCH / itchy E3 ubiquitin protein ligase / Q96J02
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q11.22
Gene start: 34363235
Gene end: 34511393
  
Corresponding Affymetrix probe sets: 209743_s_at (Human Genome U133 Plus 2.0 Array)   209744_x_at (Human Genome U133 Plus 2.0 Array)   217094_s_at (Human Genome U133 Plus 2.0 Array)   235057_at (Human Genome U133 Plus 2.0 Array)   236235_at (Human Genome U133 Plus 2.0 Array)   239101_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000492520
Ensembl peptide - ENSP00000363998
Ensembl peptide - ENSP00000445608
Ensembl peptide - ENSP00000491176
Ensembl peptide - ENSP00000262650
NCBI entrez gene - 83737     See in Manteia.
OMIM - 606409
RefSeq - XM_017028091
RefSeq - NM_001257138
RefSeq - NM_001324197
RefSeq - NM_001324198
RefSeq - NM_031483
RefSeq - XM_005260570
RefSeq - XM_011529079
RefSeq - XM_017028089
RefSeq - XM_017028090
RefSeq - NM_001257137
RefSeq Peptide - NP_001311127
RefSeq Peptide - NP_001244066
RefSeq Peptide - NP_001244067
RefSeq Peptide - NP_113671
RefSeq Peptide - NP_001311126
swissprot - Q96J02
swissprot - A0A1W2PR79
swissprot - A0A1W2PNZ8
Ensembl - ENSG00000078747
  
Related genetic diseases (OMIM): 613385 - Autoimmune disease, multisystem, with facial dysmorphism, 613385
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 itchaENSDARG00000074903Danio rerio
 itchbENSDARG00000099199Danio rerio
 ITCHENSGALG00000040474Gallus gallus
 ItchENSMUSG00000027598Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WWP1 / Q9H0M0 / WW domain containing E3 ubiquitin protein ligase 1ENSG0000012312460
WWP2 / O00308 / WW domain containing E3 ubiquitin protein ligase 2ENSG0000019837355
NEDD4L / Q96PU5 / neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligaseENSG0000004975937
NEDD4 / P46934 / neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligaseENSG0000006986935
HECW1 / Q76N89 / HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1ENSG0000000274634
Q9HAU4 / SMURF2 / SMAD specific E3 ubiquitin protein ligase 2ENSG0000010885433
Q9HCE7 / SMURF1 / SMAD specific E3 ubiquitin protein ligase 1ENSG0000019874233
HECW2 / Q9P2P5 / HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2ENSG0000013841132
HACE1 / Q8IYU2 / HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1ENSG0000008538223


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR000569  HECT domain
 IPR001202  WW domain
 IPR024928  E3 ubiquitin-protein ligase, SMURF1 type
 IPR035892  C2 domain superfamily
 IPR035983  HECT, E3 ligase catalytic domain
 IPR036020  WW domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IEA
 biological_processGO:0001558 regulation of cell growth NAS
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002669 positive regulation of T cell anergy IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0006954 inflammatory response NAS
 biological_processGO:0007219 Notch signaling pathway TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032088 negative regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:0032480 negative regulation of type I interferon production TAS
 biological_processGO:0035519 protein K29-linked ubiquitination IDA
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045732 positive regulation of protein catabolic process IEA
 biological_processGO:0046329 negative regulation of JNK cascade IEA
 biological_processGO:0046642 negative regulation of alpha-beta T cell proliferation IEA
 biological_processGO:0046718 viral entry into host cell TAS
 biological_processGO:0050687 negative regulation of defense response to virus IEA
 biological_processGO:0051607 defense response to virus IEA
 biological_processGO:0051865 protein autoubiquitination IMP
 biological_processGO:0070423 nucleotide-binding oligomerization domain containing signaling pathway TAS
 biological_processGO:0070534 protein K63-linked ubiquitination IDA
 biological_processGO:0070936 protein K48-linked ubiquitination IEA
 biological_processGO:0090085 regulation of protein deubiquitination IEA
 biological_processGO:1902036 regulation of hematopoietic stem cell differentiation TAS
 biological_processGO:2000646 positive regulation of receptor catabolic process IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0019787 ubiquitin-like protein transferase activity TAS
 molecular_functionGO:0043021 ribonucleoprotein complex binding IPI
 molecular_functionGO:0044389 ubiquitin-like protein ligase binding IPI
 molecular_functionGO:0045236 CXCR chemokine receptor binding IPI
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA
 molecular_functionGO:1990763 arrestin family protein binding IPI


Pathways (from Reactome)
Pathway description
Downregulation of ERBB4 signaling
NOD1/2 Signaling Pathway
Activated NOTCH1 Transmits Signal to the Nucleus
Degradation of GLI1 by the proteasome
Hedgehog on state
RUNX1 regulates transcription of genes involved in differentiation of HSCs
Negative regulators of DDX58/IFIH1 signaling
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000269 Prominent occiput 
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 HP:0000331 Small chin 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002028 Chronic diarrhea 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002960 Autoimmune disease 
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000111087 GLI1 / P08151 / GLI family zinc finger 1  / reaction / complex
 ENSG00000178568 ERBB4 / Q15303 / erb-b2 receptor tyrosine kinase 4  / reaction / complex
 ENSG00000135144 DTX1 / Q86Y01 / deltex E3 ubiquitin ligase 1  / complex / reaction
 ENSG00000115267 IFIH1 / Q9BYX4 / interferon induced with helicase C domain 1  / reaction / complex
 ENSG00000148400 NOTCH1 / P46531  / complex / reaction
 ENSG00000181481 Q8IUD6 / RNF135 / ring finger protein 135  / reaction / complex
 ENSG00000121060 Q14258 / TRIM25 / tripartite motif containing 25  / reaction / complex
 ENSG00000133961 NUMB / P49757 / NUMB, endocytic adaptor protein  / reaction / complex
 ENSG00000197111 PCBP2 / Q15366 / poly(rC) binding protein 2  / complex / reaction
 ENSG00000107882 SUFU / Q9UMX1 / SUFU negative regulator of hedgehog signaling  / complex / reaction
 ENSG00000107201 DDX58 / O95786 / DExD/H-box helicase 58  / complex / reaction
 ENSG00000088888 MAVS / Q7Z434 / mitochondrial antiviral signaling protein  / reaction / complex






 

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