ENSG00000049759


Homo sapiens

Features
Gene ID: ENSG00000049759
  
Biological name :NEDD4L
  
Synonyms : NEDD4L / neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase / Q96PU5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: 1
Band: q21.31
Gene start: 58044367
Gene end: 58401540
  
Corresponding Affymetrix probe sets: 212445_s_at (Human Genome U133 Plus 2.0 Array)   212448_at (Human Genome U133 Plus 2.0 Array)   226974_at (Human Genome U133 Plus 2.0 Array)   241396_at (Human Genome U133 Plus 2.0 Array)   242132_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000467072
Ensembl peptide - ENSP00000466789
Ensembl peptide - ENSP00000467768
Ensembl peptide - ENSP00000490696
Ensembl peptide - ENSP00000479462
Ensembl peptide - ENSP00000468546
Ensembl peptide - ENSP00000468332
Ensembl peptide - ENSP00000256830
Ensembl peptide - ENSP00000348847
Ensembl peptide - ENSP00000350569
Ensembl peptide - ENSP00000372301
Ensembl peptide - ENSP00000383199
Ensembl peptide - ENSP00000389406
Ensembl peptide - ENSP00000393395
Ensembl peptide - ENSP00000405440
Ensembl peptide - ENSP00000411947
Ensembl peptide - ENSP00000465669
Ensembl peptide - ENSP00000466776
NCBI entrez gene - 23327     See in Manteia.
OMIM - 606384
RefSeq - XM_017025681
RefSeq - NM_001144968
RefSeq - NM_001144969
RefSeq - NM_001144970
RefSeq - NM_001144971
RefSeq - NM_001243960
RefSeq - NM_015277
RefSeq - XM_005266658
RefSeq - XM_005266660
RefSeq - XM_005266663
RefSeq - XM_006722421
RefSeq - XM_006722424
RefSeq - XM_006722425
RefSeq - XM_006722426
RefSeq - XM_006722428
RefSeq - XM_006722430
RefSeq - XM_011525887
RefSeq - XM_017025676
RefSeq - XM_017025677
RefSeq - XM_017025678
RefSeq - XM_017025679
RefSeq - XM_017025680
RefSeq - NM_001144964
RefSeq - NM_001144965
RefSeq - NM_001144966
RefSeq - NM_001144967
RefSeq Peptide - NP_001138437
RefSeq Peptide - NP_001138438
RefSeq Peptide - NP_001138439
RefSeq Peptide - NP_001138440
RefSeq Peptide - NP_001138441
RefSeq Peptide - NP_001138442
RefSeq Peptide - NP_001138443
RefSeq Peptide - NP_001230889
RefSeq Peptide - NP_056092
RefSeq Peptide - NP_001138436
swissprot - A0A1B0GVY1
swissprot - Q96PU5
swissprot - A0A140TA85
swissprot - A0A087WVI6
swissprot - A0A024R2A4
swissprot - K7EKL1
swissprot - K7EN51
swissprot - K7ENS6
swissprot - K7EQC5
swissprot - K7ERN1
swissprot - A0A024R281
Ensembl - ENSG00000049759
  
Related genetic diseases (OMIM): 617201 - Periventricular nodular heterotopia 7, 617201
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nedd4lENSDARG00000060006Danio rerio
 ENSGALG00000034584Gallus gallus
 ENSGALG00000031355Gallus gallus
 Nedd4lENSMUSG00000024589Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NEDD4 / P46934 / neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligaseENSG0000006986958
ITCH / Q96J02 / itchy E3 ubiquitin protein ligaseENSG0000007874734
WWP1 / Q9H0M0 / WW domain containing E3 ubiquitin protein ligase 1ENSG0000012312434
HECW2 / Q9P2P5 / HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2ENSG0000013841133
HECW1 / Q76N89 / HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1ENSG0000000274633
WWP2 / O00308 / WW domain containing E3 ubiquitin protein ligase 2ENSG0000019837332
Q9HAU4 / SMURF2 / SMAD specific E3 ubiquitin protein ligase 2ENSG0000010885431
Q9HCE7 / SMURF1 / SMAD specific E3 ubiquitin protein ligase 1ENSG0000019874229
HACE1 / Q8IYU2 / HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1ENSG0000008538222


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR000569  HECT domain
 IPR001202  WW domain
 IPR024928  E3 ubiquitin-protein ligase, SMURF1 type
 IPR035892  C2 domain superfamily
 IPR035983  HECT, E3 ligase catalytic domain
 IPR036020  WW domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0000209 protein polyubiquitination TAS
 biological_processGO:0003254 regulation of membrane depolarization IDA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0006513 protein monoubiquitination IEA
 biological_processGO:0006814 sodium ion transport NAS
 biological_processGO:0006883 cellular sodium ion homeostasis NAS
 biological_processGO:0007588 excretion NAS
 biological_processGO:0010038 response to metal ion IDA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016567 protein ubiquitination NAS
 biological_processGO:0019058 viral life cycle TAS
 biological_processGO:0030104 water homeostasis NAS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031647 regulation of protein stability IMP
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0034765 regulation of ion transmembrane transport IDA
 biological_processGO:0042176 regulation of protein catabolic process NAS
 biological_processGO:0042391 regulation of membrane potential IDA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0045732 positive regulation of protein catabolic process IEA
 biological_processGO:0045807 positive regulation of endocytosis NAS
 biological_processGO:0060306 regulation of membrane repolarization IDA
 biological_processGO:0070936 protein K48-linked ubiquitination IDA
 biological_processGO:0086005 ventricular cardiac muscle cell action potential ISS
 biological_processGO:1901016 regulation of potassium ion transmembrane transporter activity IDA
 biological_processGO:1901017 negative regulation of potassium ion transmembrane transporter activity IDA
 biological_processGO:1901380 negative regulation of potassium ion transmembrane transport IDA
 biological_processGO:1902306 negative regulation of sodium ion transmembrane transport IDA
 biological_processGO:1903861 positive regulation of dendrite extension IDA
 biological_processGO:2000009 negative regulation of protein localization to cell surface IDA
 biological_processGO:2000650 negative regulation of sodium ion transmembrane transporter activity IDA
 biological_processGO:2001288 positive regulation of caveolin-mediated endocytosis ISS
 cellular_componentGO:0005622 intracellular IC
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005771 multivesicular body IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015459 potassium channel regulator activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0017080 sodium channel regulator activity IDA
 molecular_functionGO:0019870 potassium channel inhibitor activity IDA
 molecular_functionGO:0019871 sodium channel inhibitor activity IDA
 molecular_functionGO:0044325 ion channel binding IPI
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Budding and maturation of HIV virion
Downregulation of TGF-beta receptor signaling
Downregulation of SMAD2/3:SMAD4 transcriptional activity
Stimuli-sensing channels
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001999 Facial dysmorphism 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002539 Cortical dysplasia 
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 HP:0003577 Onset at birth 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000132155 RAF1 / P04049 / Raf-1 proto-oncogene, serine/threonine kinase  / complex
 ENSG00000175387 SMAD2 / Q15796 / SMAD family member 2  / reaction / complex
 ENSG00000163513 P37173 / TGFBR2 / transforming growth factor beta receptor 2  / reaction / complex
 ENSG00000106799 P36897 / TGFBR1 / transforming growth factor beta receptor 1  / reaction / complex
 ENSG00000118515 SGK1 / O00141 / serum/glucocorticoid regulated kinase 1  / complex
 ENSG00000101665 SMAD7 / O15105 / SMAD family member 7  / reaction / complex
 ENSG00000105329 TGFB1 / P01137 / transforming growth factor beta 1  / complex / reaction
 ENSG00000104205 SGK3 / Q96BR1 / serum/glucocorticoid regulated kinase family member 3  / complex
 ENSG00000101049 SGK2 / Q9HBY8 / SGK2, serine/threonine kinase 2  / complex
 ENSG00000166949 SMAD3 / P84022 / SMAD family member 3  / complex / reaction
 ENSG00000141646 SMAD4 / Q13485 / SMAD family member 4  / reaction / complex
 ENSG00000157514 Q99576 / TSC22D3 / TSC22 domain family member 3  / complex






 

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