ENSG00000113580


Homo sapiens

Features
Gene ID: ENSG00000113580
  
Biological name :NR3C1
  
Synonyms : NR3C1 / nuclear receptor subfamily 3 group C member 1 / P04150
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q31.3
Gene start: 143277931
Gene end: 143435512
  
Corresponding Affymetrix probe sets: 201865_x_at (Human Genome U133 Plus 2.0 Array)   201866_s_at (Human Genome U133 Plus 2.0 Array)   211671_s_at (Human Genome U133 Plus 2.0 Array)   216321_s_at (Human Genome U133 Plus 2.0 Array)   232431_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000425313
Ensembl peptide - ENSP00000424747
Ensembl peptide - ENSP00000425374
Ensembl peptide - ENSP00000427672
Ensembl peptide - ENSP00000426478
Ensembl peptide - ENSP00000231509
Ensembl peptide - ENSP00000343205
Ensembl peptide - ENSP00000377977
Ensembl peptide - ENSP00000377979
Ensembl peptide - ENSP00000387672
Ensembl peptide - ENSP00000405282
Ensembl peptide - ENSP00000420856
Ensembl peptide - ENSP00000422518
NCBI entrez gene - 2908     See in Manteia.
OMIM - 138040
RefSeq - NM_001018076
RefSeq - NM_000176
RefSeq - NM_001018074
RefSeq - NM_001018075
RefSeq - NM_001018077
RefSeq - NM_001020825
RefSeq - NM_001024094
RefSeq - NM_001204258
RefSeq - NM_001204259
RefSeq - NM_001204260
RefSeq - NM_001204261
RefSeq - NM_001204262
RefSeq - NM_001204263
RefSeq - NM_001204264
RefSeq - NM_001204265
RefSeq - XM_005268419
RefSeq - XM_005268420
RefSeq - XM_005268422
RefSeq - XM_005268423
RefSeq - XM_011537637
RefSeq - XM_017009397
RefSeq - XM_017009398
RefSeq Peptide - NP_001018085
RefSeq Peptide - NP_001191191
RefSeq Peptide - NP_001191192
RefSeq Peptide - NP_001191193
RefSeq Peptide - NP_001191194
RefSeq Peptide - NP_000167
RefSeq Peptide - NP_001018084
RefSeq Peptide - NP_001018086
RefSeq Peptide - NP_001018087
RefSeq Peptide - NP_001018661
RefSeq Peptide - NP_001019265
RefSeq Peptide - NP_001191187
RefSeq Peptide - NP_001191188
RefSeq Peptide - NP_001191189
RefSeq Peptide - NP_001191190
swissprot - E5KQF5
swissprot - F1D8N4
swissprot - P04150
swissprot - Q3MSN4
swissprot - E5KQF6
swissprot - D6RDA9
Ensembl - ENSG00000113580
  
Related genetic diseases (OMIM): 615962 - Glucocorticoid resistance, 615962

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr3c1ENSDARG00000025032Danio rerio
 NR3C1ENSGALG00000032992Gallus gallus
 Nr3c1ENSMUSG00000024431Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NR3C2 / P08235 / nuclear receptor subfamily 3 group C member 2ENSG0000015162340
PGR / P06401 / progesterone receptorENSG0000008217535
AR / P10275 / androgen receptorENSG0000016908330
ESR2 / Q92731 / estrogen receptor 2ENSG0000014000916
NR4A1 / P22736 / nuclear receptor subfamily 4 group A member 1ENSG0000012335815
ESRRA / P11474 / estrogen related receptor alphaENSG0000017315315
ESR1 / P03372 / estrogen receptor 1ENSG0000009183115
ESRRG / P62508 / estrogen related receptor gammaENSG0000019648215
ESRRB / O95718 / estrogen related receptor betaENSG0000011971514
NR4A2 / P43354 / nuclear receptor subfamily 4 group A member 2ENSG0000015323414
NR4A3 / Q92570 / nuclear receptor subfamily 4 group A member 3ENSG0000011950813


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001409  Glucocorticoid receptor
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR035500  Nuclear hormone receptor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IDA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007059 chromosome segregation IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0042921 glucocorticoid receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0043402 glucocorticoid mediated signaling pathway IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0051301 cell division IEA
 biological_processGO:0071383 cellular response to steroid hormone stimulus IDA
 biological_processGO:0071385 cellular response to glucocorticoid stimulus IDA
 biological_processGO:0071549 cellular response to dexamethasone stimulus IMP
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IDA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004883 glucocorticoid receptor activity TAS
 molecular_functionGO:0005496 steroid binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0032183 SUMO binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051879 Hsp90 protein binding IPI
 molecular_functionGO:1990239 steroid hormone binding IDA


Pathways (from Reactome)
Pathway description
HSP90 chaperone cycle for steroid hormone receptors (SHR)
Circadian Clock
SUMOylation of intracellular receptors
PTK6 Expression
Regulation of RUNX2 expression and activity


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000062 Ambiguous genitalia 
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 HP:0000739 Anxiety 
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 HP:0000789 Infertility 
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 HP:0000798 Oligospermia 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0000858 Menstrual irregularities 
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 HP:0000876 Oligomenorrhea 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001061 Acne 
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 HP:0001297 Stroke 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002292 Frontal balding (male pattern baldness) 
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 HP:0002900 Hypokalemia 
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 HP:0003118 Increased serum cortisol 
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 HP:0003154 Elevated plasma ACTH 
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 HP:0004319 Decreased aldosterone production 
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 HP:0008221 Enlarged adrenal glands 
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 HP:0010458 Female pseudohermaphroditism "Hermaphroditism refers to a discrepancy between the morphology of the gonads and that of the external genitalia. In female pseudohermaphroditism, the genotype is female (XX) and the gonads are ovaries, but the external genitalia are virilized." [HPO:curators]
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 HP:0012030 Increased urinary cortisol level "Abnormally increased concentration of `cortisol` (CHEBI:17650) in the urine." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0030087 Abnormal testosterone level "An anomalous concentration of testosterone in the blood." []
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 HP:0200114 Metabolic alkalosis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000004478 FKBP4 / Q02790 / FK506 binding protein 4  / complex
 ENSG00000080824 P07900 / HSP90AA1 / heat shock protein 90 alpha family class A member 1  / complex
 ENSG00000096384 P08238 / HSP90AB1 / heat shock protein 90 alpha family class B member 1  / complex
 ENSG00000116016 EPAS1 / Q99814 / endothelial PAS domain protein 1  / complex / reaction
 ENSG00000110958 PTGES3 / Q15185 / prostaglandin E synthase 3  / complex
 ENSG00000113580 NR3C1 / P04150 / nuclear receptor subfamily 3 group C member 1  / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction
 ENSG00000141456 PELP1 / Q8IZL8 / proline, glutamate and leucine rich protein 1  / complex / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction






 

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