ENSG00000165379


Homo sapiens

Features
Gene ID: ENSG00000165379
  
Biological name :LRFN5
  
Synonyms : leucine rich repeat and fibronectin type III domain containing 5 / LRFN5 / Q96NI6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q21.1
Gene start: 41607570
Gene end: 41904549
  
Corresponding Affymetrix probe sets: 230644_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000298119
Ensembl peptide - ENSP00000451067
Ensembl peptide - ENSP00000451897
NCBI entrez gene - 145581     See in Manteia.
OMIM - 612811
RefSeq - XM_017021050
RefSeq - NM_152447
RefSeq - XM_005267369
RefSeq - XM_017021048
RefSeq - XM_017021049
RefSeq Peptide - NP_689660
RefSeq Peptide - NP_001317035
RefSeq Peptide - NP_001333102
RefSeq Peptide - NP_001333104
swissprot - G3V4N1
swissprot - Q96NI6
swissprot - G3V364
Ensembl - ENSG00000165379
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrfn5aENSDARG00000071230Danio rerio
 lrfn5bENSDARG00000079396Danio rerio
 LRFN5ENSGALG00000012505Gallus gallus
 Lrfn5ENSMUSG00000035653Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRFN2 / Q9ULH4 / leucine rich repeat and fibronectin type III domain containing 2ENSG0000015656451
LRFN1 / Q9P244 / leucine rich repeat and fibronectin type III domain containing 1ENSG0000012801149
LRFN3 / Q9BTN0 / leucine rich repeat and fibronectin type III domain containing 3ENSG0000012624344
LRFN4 / Q6PJG9 / leucine rich repeat and fibronectin type III domain containing 4ENSG0000017362141
LINGO3 / P0C6S8 / leucine rich repeat and Ig domain containing 3ENSG0000022000820
LRRC4C / Q9HCJ2 / leucine rich repeat containing 4CENSG0000014894819
LINGO1 / Q96FE5 / leucine rich repeat and Ig domain containing 1ENSG0000016978319
LINGO2 / Q7L985 / leucine rich repeat and Ig domain containing 2ENSG0000017448219
LRRN3 / Q9H3W5 / leucine rich repeat neuronal 3ENSG0000017311419
LRRC4B / Q9NT99 / leucine rich repeat containing 4BENSG0000013140918
LRRN1 / Q6UXK5 / leucine rich repeat neuronal 1ENSG0000017592818
LRRC4 / Q9HBW1 / leucine rich repeat containing 4ENSG0000012859417
LINGO4 / Q6UY18 / leucine rich repeat and Ig domain containing 4ENSG0000021317117
LRRN2 / O75325 / leucine rich repeat neuronal 2ENSG0000017038217


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR026879  Leucine-rich repeat and fibronectin type-III domain-containing protein 5
 IPR026906  Leucine rich repeat 5
 IPR032675  Leucine-rich repeat domain superfamily
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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