ENSG00000168621


Homo sapiens

Features
Gene ID: ENSG00000168621
  
Biological name :GDNF
  
Synonyms : GDNF / glial cell derived neurotrophic factor / P39905
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: p13.2
Gene start: 37812677
Gene end: 37839686
  
Corresponding Affymetrix probe sets: 221359_at (Human Genome U133 Plus 2.0 Array)   230090_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423557
Ensembl peptide - ENSP00000409007
Ensembl peptide - ENSP00000424592
Ensembl peptide - ENSP00000478722
Ensembl peptide - ENSP00000425928
Ensembl peptide - ENSP00000317145
Ensembl peptide - ENSP00000339703
Ensembl peptide - ENSP00000371248
NCBI entrez gene - 2668     See in Manteia.
OMIM - 600837
RefSeq - XM_017009337
RefSeq - NM_000514
RefSeq - NM_001190468
RefSeq - NM_001190469
RefSeq - NM_001278098
RefSeq - NM_199231
RefSeq - XM_011514030
RefSeq Peptide - NP_001177398
RefSeq Peptide - NP_001265027
RefSeq Peptide - NP_954701
RefSeq Peptide - NP_000505
RefSeq Peptide - NP_001177397
swissprot - P39905
swissprot - A0A0S2Z3V2
swissprot - A0A0S2Z3T2
swissprot - A0A0C4DGC2
Ensembl - ENSG00000168621
  
Related genetic diseases (OMIM): 171300 - {Pheochromocytoma, modifier of}, 171300
  209880 - Central hypoventilation syndrome, 209880
  613711 - {Hirschsprung disease, susceptibility to, 3}, 613711
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gdnfaENSDARG00000039959Danio rerio
 gdnfbENSDARG00000103764Danio rerio
 GDNFENSGALG00000003716Gallus gallus
 GdnfENSMUSG00000022144Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NRTN / Q99748 / neurturinENSG0000017111925
ARTN / Q5T4W7 / arteminENSG0000011740724
PSPN / O60542 / persephinENSG0000012565018


Protein motifs (from Interpro)
Interpro ID Name
 IPR001839  Transforming growth factor-beta, C-terminal
 IPR016649  Glial cell line-derived neurotrophic factor
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade TAS
 biological_processGO:0001656 metanephros development ISS
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis ISS
 biological_processGO:0001755 neural crest cell migration IDA
 biological_processGO:0001759 organ induction IEA
 biological_processGO:0001941 postsynaptic membrane organization IEA
 biological_processGO:0003337 mesenchymal to epithelial transition involved in metanephros morphogenesis IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007411 axon guidance TAS
 biological_processGO:0007422 peripheral nervous system development IEA
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0008344 adult locomotory behavior TAS
 biological_processGO:0010468 regulation of gene expression IGI
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0021784 postganglionic parasympathetic fiber development ISS
 biological_processGO:0030432 peristalsis ISS
 biological_processGO:0031175 neuron projection development IDA
 biological_processGO:0032770 positive regulation of monooxygenase activity IDA
 biological_processGO:0033603 positive regulation of dopamine secretion TAS
 biological_processGO:0043066 negative regulation of apoptotic process TAS
 biological_processGO:0043524 negative regulation of neuron apoptotic process IDA
 biological_processGO:0045597 positive regulation of cell differentiation IGI
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048255 mRNA stabilization IDA
 biological_processGO:0048484 enteric nervous system development ISS
 biological_processGO:0048485 sympathetic nervous system development ISS
 biological_processGO:0051584 regulation of dopamine uptake involved in synaptic transmission IDA
 biological_processGO:0060676 ureteric bud formation IEA
 biological_processGO:0060688 regulation of morphogenesis of a branching structure ISS
 biological_processGO:0072107 positive regulation of ureteric bud formation IDA
 biological_processGO:0072108 positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis IEA
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis IDA
 biological_processGO:2000736 regulation of stem cell differentiation TAS
 biological_processGO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0005088 Ras guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0005102 signaling receptor binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity IEA
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
NCAM1 interactions
RAF/MAP kinase cascade
RET signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000153 Abnormality of the mouth "An abnormality of the `mouth` (FMA:49184)." [HPO:probinson]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001181 Adducted thumbs 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0002014 Diarrhea 
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 HP:0002017 Nausea and vomiting 
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 HP:0002019 Constipation 
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 HP:0002027 Abdominal pain 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002791 Hypoventilation 
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 HP:0003005 Ganglioneuroma 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004370 Abnormality of temperature regulation 
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 HP:0005214 Intestinal obstruction 
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 HP:0006747 Ganglioneuroblastoma 
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 HP:0007110 Central hypoventilation 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100031 Neoplasm of the thyroid gland "The presence of a `neoplasm` (MPATH:218) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100806 Sepsis 
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 HP:0200008 Multiple intestinal polyps 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000124181 PLCG1 / P19174 / phospholipase C gamma 1  / complex / reaction
 ENSG00000125650 PSPN / O60542 / persephin  / complex / reaction
 ENSG00000109458 GAB1 / Q13480 / GRB2 associated binding protein 1  / complex
 ENSG00000141738 GRB7 / Q14451 / growth factor receptor bound protein 7  / complex / reaction
 ENSG00000168546 GFRA2 / O00451 / GDNF family receptor alpha 2  / reaction / complex
 ENSG00000171119 NRTN / Q99748 / neurturin  / complex / reaction
 ENSG00000146013 GFRA3 / O60609 / GDNF family receptor alpha 3  / complex / reaction
 ENSG00000125861 GFRA4 / Q9GZZ7 / GDNF family receptor alpha 4  / complex / reaction
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / complex / reaction
 ENSG00000165731 RET / P07949 / ret proto-oncogene  / complex / reaction
 ENSG00000149294 NCAM1 / P13591 / neural cell adhesion molecule 1  / reaction / complex
 ENSG00000106070 GRB10 / Q13322 / growth factor receptor bound protein 10  / reaction / complex
 ENSG00000076864 P47736 / RAP1GAP / RAP1 GTPase activating protein  / reaction / complex
 ENSG00000166225 FRS2 / Q8WU20 / fibroblast growth factor receptor substrate 2  / complex / reaction
 ENSG00000051382 P42338 / PIK3CB / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta  / complex
 ENSG00000168621 GDNF / P39905 / glial cell derived neurotrophic factor  / reaction / complex
 ENSG00000117407 ARTN / Q5T4W7 / artemin  / reaction / complex
 ENSG00000171608 O00329 / PIK3CD / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta  / complex
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / complex / reaction
 ENSG00000115904 SOS1 / Q07889 / SOS Ras/Rac guanine nucleotide exchange factor 1  / complex / reaction
 ENSG00000033327 GAB2 / Q9UQC2 / GRB2 associated binding protein 2  / complex
 ENSG00000121879 P42336 / PIK3CA / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha  / complex
 ENSG00000145675 P27986 / PIK3R1 / phosphoinositide-3-kinase regulatory subunit 1  / complex
 ENSG00000179295 PTPN11 / Q06124 / protein tyrosine phosphatase, non-receptor type 11  / reaction / complex
 ENSG00000151892 GFRA1 / P56159 / GDNF family receptor alpha 1  / reaction / complex
 ENSG00000160691 SHC1 / P29353 / SHC adaptor protein 1  / complex / reaction






 

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