ENSG00000177565


Homo sapiens

Features
Gene ID: ENSG00000177565
  
Biological name :TBL1XR1
  
Synonyms : Q9BZK7 / TBL1XR1 / transducin beta like 1 X-linked receptor 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q26.32
Gene start: 177019340
Gene end: 177228000
  
Corresponding Affymetrix probe sets: 221428_s_at (Human Genome U133 Plus 2.0 Array)   222633_at (Human Genome U133 Plus 2.0 Array)   222634_s_at (Human Genome U133 Plus 2.0 Array)   223013_at (Human Genome U133 Plus 2.0 Array)   233633_at (Human Genome U133 Plus 2.0 Array)   235890_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000391559
Ensembl peptide - ENSP00000387849
Ensembl peptide - ENSP00000392180
Ensembl peptide - ENSP00000490514
Ensembl peptide - ENSP00000490246
Ensembl peptide - ENSP00000486866
Ensembl peptide - ENSP00000486622
Ensembl peptide - ENSP00000486324
Ensembl peptide - ENSP00000486235
Ensembl peptide - ENSP00000486082
Ensembl peptide - ENSP00000415506
Ensembl peptide - ENSP00000413251
Ensembl peptide - ENSP00000406297
Ensembl peptide - ENSP00000405574
Ensembl peptide - ENSP00000404863
Ensembl peptide - ENSP00000402402
Ensembl peptide - ENSP00000401044
Ensembl peptide - ENSP00000398477
Ensembl peptide - ENSP00000397450
Ensembl peptide - ENSP00000396120
Ensembl peptide - ENSP00000263964
NCBI entrez gene - 79718     See in Manteia.
OMIM - 608628
RefSeq - NM_001321193
RefSeq - NM_001321194
RefSeq - NM_001321195
RefSeq - NM_024665
RefSeq - XM_005247775
RefSeq - XM_006713746
RefSeq - XM_011513141
RefSeq - XM_011513142
RefSeq - XM_011513143
RefSeq - XM_017007185
RefSeq Peptide - NP_001308124
RefSeq Peptide - NP_001308122
RefSeq Peptide - NP_001308123
RefSeq Peptide - NP_078941
swissprot - A0A0D9SFS8
swissprot - A0A0D9SFI2
swissprot - A0A0D9SF63
swissprot - A0A0D9SF25
swissprot - F8W9D8
swissprot - A0A0D9SEW5
swissprot - Q9BZK7
swissprot - C9JY82
swissprot - C9JTW8
swissprot - C9JLJ1
swissprot - C9JEC9
swissprot - C9JCW4
swissprot - C9JCK0
swissprot - C9JBN1
swissprot - C9J903
swissprot - C9J3H2
swissprot - C9J7E1
swissprot - C9IYU9
swissprot - A0A1B0GVH3
swissprot - A0A1B0GUU2
Ensembl - ENSG00000177565
  
Related genetic diseases (OMIM): 602342 - Pierpont syndrome, 602342
  616944 - Mental retardation, autosomal dominant 41 , 616944
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbl1xr1aENSDARG00000058696Danio rerio
 tbl1xr1bENSDARG00000008966Danio rerio
 TBL1XR1ENSGALG00000039182Gallus gallus
 Q8BHJ5ENSMUSG00000027630Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBL1X / O60907 / transducin beta like 1 X-linkedENSG0000010184988
TBL1Y / Q9BQ87 / transducin beta like 1 Y-linkedENSG0000009237786
THOC3 / Q96J01 / THO complex 3ENSG0000005159615


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0002021 response to dietary excess IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0016042 lipid catabolic process IEA
 biological_processGO:0016575 histone deacetylation IBA
 biological_processGO:0019216 regulation of lipid metabolic process TAS
 biological_processGO:0030814 obsolete regulation of cAMP metabolic process IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0050872 white fat cell differentiation IEA
 biological_processGO:0060612 adipose tissue development IEA
 biological_processGO:0060613 fat pad development IEA
 biological_processGO:0090207 regulation of triglyceride metabolic process IEA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IMP
 cellular_componentGO:0000118 histone deacetylase complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005876 spindle microtubule IDA
 cellular_componentGO:0017053 transcriptional repressor complex IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IGI
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008013 beta-catenin binding IPI
 molecular_functionGO:0042393 histone binding IDA
 molecular_functionGO:0044212 transcription regulatory region DNA binding ISS
 molecular_functionGO:0047485 protein N-terminus binding IPI


Pathways (from Reactome)
Pathway description
RORA activates gene expression
BMAL1:CLOCK,NPAS2 activates circadian gene expression
PPARA activates gene expression
NOTCH1 Intracellular Domain Regulates Transcription
Transcriptional activation of mitochondrial biogenesis
Activation of gene expression by SREBF (SREBP)
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
HDACs deacetylate histones
Transcriptional regulation of white adipocyte differentiation
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
Circadian Clock


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000232 Everted lower lip 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000283 Broad face 
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 HP:0000289 Wide philtrum 
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 HP:0000293 Full cheeks 
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000445 Broad nose 
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 HP:0000470 Short neck 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000687 Widely spaced teeth 
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 HP:0000750 Impaired language development 
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 HP:0000759 Abnormality of the peripheral nervous system 
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 HP:0001169 Broad hands 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001508 Failure to thrive 
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 HP:0001769 Broad feet "Increased width of the feet." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001869 Deep plantar creases 
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 HP:0002265 Large fleshy ears 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002708 Prominent median palatal raphe "Unusual prominence of the median palatal raphe, which is the ridge formed by the fusion of the two plates of the skull that form the hard palate." [HPO:curators]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003812 Phenotypic variability 
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006191 Deep palmar creases "An increased depth of the palmar creases." [HPO:curators]
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 HP:0006610 Wide intermamillary distance 
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 HP:0007946 Narrow palpebral fissure, unilateral 
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 HP:0009890 High frontal hairline "An abnormally high hairline (border between forehead and scalp hair)." [HPO:curators]
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 HP:0011341 Long upper lip "Increased width of the `upper lip` (FMA:59817)." [DDD:jhurst]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100853 Hypoplastic areola 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000101849 TBL1X / O60907 / transducin beta like 1 X-linked  / reaction / complex
 ENSG00000186951 PPARA / Q07869 / peroxisome proliferator activated receptor alpha  / complex / reaction
 ENSG00000169057 MECP2 / P51608 / methyl-CpG binding protein 2  / complex / reaction
 ENSG00000171720 HDAC3 / O15379 / histone deacetylase 3  / complex
 ENSG00000141027 NCOR1 / O75376 / nuclear receptor corepressor 1  / complex
 ENSG00000186350 RXRA / P19793 / retinoid X receptor alpha  / reaction / complex
 ENSG00000204231 RXRB / P28702 / retinoid X receptor beta  / complex
 ENSG00000177565 Q9BZK7 / TBL1XR1 / transducin beta like 1 X-linked receptor 1  / complex
 ENSG00000025434 NR1H3 / Q13133 / nuclear receptor subfamily 1 group H member 3  / complex
 ENSG00000131408 NR1H2 / P55055 / nuclear receptor subfamily 1 group H member 2  / complex
 ENSG00000163586 FABP1 / P07148 / fatty acid binding protein 1  / reaction
 ENSG00000196498 NCOR2 / Q9Y618 / nuclear receptor corepressor 2  / complex
 ENSG00000132522 GPS2 / Q13227 / G protein pathway suppressor 2  / complex






 

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