ENSMUSG00000030830


Mus musculus

Features
Gene ID: ENSMUSG00000030830
  
Biological name :Itgal
  
Synonyms : Integrin alpha-L / Itgal / P24063
  
Possible biological names infered from orthology : integrin subunit alpha L / P20701
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: F3
Gene start: 127296260
Gene end: 127335138
  
Corresponding Affymetrix probe sets: 10557591 (MoGene1.0st)   1425367_at (Mouse Genome 430 2.0 Array)   1435560_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000112591
Ensembl peptide - ENSMUSP00000131847
Ensembl peptide - ENSMUSP00000113946
Ensembl peptide - ENSMUSP00000113396
Ensembl peptide - ENSMUSP00000101913
NCBI entrez gene - 16408     See in Manteia.
MGI - MGI:96606
RefSeq - NM_008400
RefSeq - NM_001253872
RefSeq - NM_001253873
RefSeq - NM_001253874
RefSeq Peptide - NP_001240801
RefSeq Peptide - NP_001240802
RefSeq Peptide - NP_001240803
RefSeq Peptide - NP_032426
swissprot - P24063
swissprot - E9Q5M7
swissprot - D3Z627
swissprot - D3YW95
swissprot - E9QNL8
Ensembl - ENSMUSG00000030830
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zmp:0000001082ENSDARG00000098899Danio rerio
 ITGALENSG00000005844Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Itgam / integrin alpha M / P11215* / integrin subunit alpha M*ENSMUSG0000003078633
Itgax / Q9QXH4 / Integrin alpha-X / P20702* / integrin subunit alpha X*ENSMUSG0000003078933
Itgam / P11215* / integrin subunit alpha M*ENSMUSG0000010859632
Itgad / Q3V0T4 / Integrin alpha-D / Q13349* / integrin subunit alpha D*ENSMUSG0000007036930
Itga10 / integrin subunit alpha 10 / O75578*ENSMUSG0000009021028
Itga1 / Q3V3R4 / Integrin alpha-1 / P56199* / integrin subunit alpha 1*ENSMUSG0000004228426
Itga11 / integrin subunit alpha 11 / Q9UKX5*ENSMUSG0000003224326
Itga2 / Q62469 / Integrin alpha-2 / P17301* / integrin subunit alpha 2*ENSMUSG0000001553326
Itgae / Q60677 / integrin alpha E, epithelial-associated / P38570* / integrin subunit alpha E*ENSMUSG0000000594725
Itga4 / integrin subunit alpha 4 / P13612*ENSMUSG0000002700920
Itga9 / B8JK39 / Integrin alpha-9 / Q13797* / integrin subunit alpha 9*ENSMUSG0000003911520
Itga3 / Q62470 / Integrin alpha-3 Integrin alpha-3 heavy chain Integrin alpha-3 light chain / P26006* / integrin subunit alpha 3*ENSMUSG0000000150719
Itga8 / A2ARA8 / Integrin alpha-8 Integrin alpha-8 heavy chain Integrin alpha-8 light chain / P53708* / integrin subunit alpha 8*ENSMUSG0000002676819
Itgav / P43406 / Integrin alpha-V Integrin alpha-V heavy chain Integrin alpha-V light chain / P06756* / integrin subunit alpha V*ENSMUSG0000002708718
Itga5 / P11688 / Integrin alpha-5 Integrin alpha-5 heavy chain Integrin alpha-5 light chain / P08648* / integrin subunit alpha 5*ENSMUSG0000000055518
Itga7 / Mus musculus integrin alpha 7 (Itga7), transcript variant 2, mRNA. / Q13683* / integrin subunit alpha 7*ENSMUSG0000002534818
Itga2b / Q9QUM0 / integrin alpha 2b / P08514* / integrin subunit alpha 2b*ENSMUSG0000003466418
Itga6 / Q61739 / Integrin alpha-6 Integrin alpha-6 heavy chain Integrin alpha-6 light chain / P23229* / integrin subunit alpha 6*ENSMUSG0000002711117


Protein motifs (from Interpro)
Interpro ID Name
 IPR000413  Integrin alpha chain
 IPR002035  von Willebrand factor, type A
 IPR013517  FG-GAP repeat
 IPR013519  Integrin alpha beta-propellor
 IPR013649  Integrin alpha-2
 IPR018184  Integrin alpha chain, C-terminal cytoplasmic region, conserved site
 IPR032695  Integrin domain superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002291 T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell ISO
 biological_processGO:0006909 phagocytosis IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules ISO
 biological_processGO:0007159 leukocyte cell-cell adhesion ISO
 biological_processGO:0007160 cell-matrix adhesion ISO
 biological_processGO:0007166 cell surface receptor signaling pathway IDA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0022407 regulation of cell-cell adhesion IDA
 biological_processGO:0022409 positive regulation of cell-cell adhesion IMP
 biological_processGO:0042102 positive regulation of T cell proliferation IMP
 biological_processGO:0043113 receptor clustering ISO
 biological_processGO:0050798 activated T cell proliferation IMP
 biological_processGO:0050850 positive regulation of calcium-mediated signaling IDA
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0001772 immunological synapse IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005911 cell-cell junction IDA
 cellular_componentGO:0008305 integrin complex IEA
 cellular_componentGO:0009897 external side of plasma membrane IDA
 cellular_componentGO:0009986 cell surface ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034687 integrin alphaL-beta2 complex ISO
 molecular_functionGO:0030369 ICAM-3 receptor activity ISO
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0050839 cell adhesion molecule binding ISO


Pathways (from Reactome)
Pathway description
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Cell surface interactions at the vascular wall
Integrin cell surface interactions
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000218 increased WBC count "greater than normal WBC numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Gdf5bp-J/Gdf5bp-J,Gdf6tm1Kng/Gdf6tm1Kng
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * A/J * C57BL/6J

Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: B6.129S7-Itgaltm1Bll

 MP:0000219 increased neutrophil count "greater than normal neutrophil numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Gdf5bp-J/Gdf5bp-J,Gdf6tm1Kng/Gdf6tm1Kng
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * A/J * C57BL/6J

Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: B6.129S7-Itgaltm1Bll

 MP:0000220 increased monocyte count "greater than normal monocyte numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Gdf5bp-J/Gdf5bp-J,Gdf6tm1Kng/Gdf6tm1Kng
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * A/J * C57BL/6J

 MP:0000222 decreased neutrophil count "fewer than normal neutrophil numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Rec8tm1Mjm/Rec8tm1Mjm
Genetic Background: either: (involves: 129S1/Sv * 129X1/SvJ) or (involves: 129S1/Sv * C57BL/6)

 MP:0000691 enlarged spleen "increased spleen size" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

 MP:0000693 spleen hyperplasia "increased cell number in the spleen" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:33401]
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Allelic Composition: Rec8tm1Mjm/Rec8tm1Mjm
Genetic Background: either: (involves: 129S1/Sv * 129X1/SvJ) or (involves: 129S1/Sv * C57BL/6)

 MP:0001272 increased metastatic potential 
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Allelic Composition: Cd14tm1Smg/Cd14tm1Smg
Genetic Background: involves: 129S1/Sv * C57BL/6

 MP:0001800 abnormal humoral immune response "abnormal immune function mediated by antibodies" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
Show

Allelic Composition: Rec8tm1Mjm/Rec8tm1Mjm
Genetic Background: either: (involves: 129S1/Sv * 129X1/SvJ) or (involves: 129S1/Sv * C57BL/6)

 MP:0001828 abnormal T cell activation "anomaly in the process of producing effector T cells from naive T cells" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
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Allelic Composition: Rec8tm1Mjm/Rec8tm1Mjm
Genetic Background: either: (involves: 129S1/Sv * 129X1/SvJ) or (involves: 129S1/Sv * C57BL/6)

 MP:0001845 abnormal inflammatory response "aberrant reaction of the microcirculation characterized by movement of fluid and leukocytes from the blood into extravascular tissues" [Pathology:ISBN 0-397-51047-0]
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Allelic Composition: Ighmbp2nmd-2J/Ighmbp2nmd-2J,Tg(Eno2-Ighmbp2)17Cx/?,Tg(Ttn-Ighmbp2)45Cx/?
Genetic Background: involves: C57BL/6J * C57BLKS/J

 MP:0002217 small lymph nodes "lymph nodes of decreased size" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

Allelic Composition: Itgaltm1.1Mshi/Itgaltm1.1Mshi
Genetic Background: involves: C57BL/6

 MP:0002339 abnormal lymph node morphology "anomalous structure, size, or celluarity of the oval or bean shaped bodies located along the lymphatic system" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

 MP:0002442 abnormal leukocyte physiology "abnormal function of any of the white blood cells (basophils, eosinophils, neutrophils, lymphocytes, or monocytes) " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Cd14tm1Smg/Cd14tm1Smg
Genetic Background: involves: 129S1/Sv * C57BL/6

 MP:0002463 abnormal neutrophil physiology "abnormal function of these granular leukocytes, which stain with neutral dyes" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Mecp2tm1.1Bird/Y
Genetic Background: involves: 129P2/OlaHsd * C57BL/6 * CBA

Allelic Composition: Edil3tm1Tq/Edil3tm1Tq,Itgaltm1Bll/Itgaltm1Bll
Genetic Background: involves: 129 * C57BL/6

 MP:0003156 abnormal lymphocyte migration/homing "altered ability of blood lymphocytes to bind to high endothelial venules (HEV), tether and roll along the luminal aspects of HEV, and migrate into the lymph nodes" [acv:Alicia C. Valenzuela, Mouse Genome Informatics Curator, J:92231]
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Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

Allelic Composition: Itgaltm1.1Mshi/Itgaltm1.1Mshi
Genetic Background: involves: C57BL/6

 MP:0003179 decreased platelet count "fewer than the normal numbers of the non-nucleated cells found in the blood and involved in blood coagulation " [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, hdene:Howard Dene , Mouse Genome Informatics Curator, J:93052]
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Allelic Composition: Itgaltm1Mak/Itgaltm1Mak
Genetic Background: B6.129P2-Itgaltm1Mak

 MP:0003627 abnormal lymphocyte rolling "anomaly in the number or velocity of lymphocytes rolling along the luminal aspects of high endothelial venules" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:95656]
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Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: B6.129S7-Itgaltm1Bll

 MP:0003628 abnormal lymphocyte adhesion "anomaly in the number of or process by which lymphocytes adhere to the luminal aspects of high endothelial venules prior to transmigration out of the vessel" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:95656]
Show

Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: B6.129S7-Itgaltm1Bll

Allelic Composition: Itgaltm1Hlz/Itgaltm1Hlz
Genetic Background: involves: 129P2/OlaHsd

Allelic Composition: Itgaltm1.1Mshi/Itgaltm1.1Mshi
Genetic Background: involves: C57BL/6

 MP:0003945 abnormal lymphocyte physiology "abnormal function of any of the white blood cells that includes B cells, T cells, and NK cells " [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
Show

Allelic Composition: Cd14tm1Smg/Cd14tm1Smg
Genetic Background: involves: 129S1/Sv * C57BL/6

 MP:0005011 increased eosinophil count "greater than normal eosinophil numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Gdf5bp-J/Gdf5bp-J,Gdf6tm1Kng/Gdf6tm1Kng
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * A/J * C57BL/6J

 MP:0005016 decreased lymphocyte number "fewer than normal white blood cell numbers " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

Allelic Composition: Itgaltm1Hlz/Itgaltm1Hlz
Genetic Background: involves: 129P2/OlaHsd

Allelic Composition: Itgaltm1.1Mshi/Itgaltm1.1Mshi
Genetic Background: involves: C57BL/6

 MP:0005017 decreased B cell number "fewer than normal B cell numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

 MP:0005070 defective NK cell cytolysis "impaired ability of these cells to destroy or dissolve targeted cells" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:6213]
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Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: B6.129S7-Itgaltm1Bll

Allelic Composition: Itgaltm1Mak/Itgaltm1Mak
Genetic Background: B6.129P2-Itgaltm1Mak

Allelic Composition: Cd44tm1Mak/Cd44tm1Mak,Itgaltm1Mak/Itgaltm1Mak
Genetic Background: B6.129P2-Cd44tm1Mak Itgaltm1Mak

 MP:0005078 abnormal cytotoxic T cell physiology "impaired function of the subset of CD8+ T lymphocytes capable of directly killing appropriately targeted cells " [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Cd14tm1Smg/Cd14tm1Smg
Genetic Background: involves: 129S1/Sv * C57BL/6

 MP:0005079 defective cytotoxic T cell cytolysis "impaired ability of these cells to destroy or dissolve targeted cells" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:6692]
Show

Allelic Composition: Itgaltm1Hlz/Itgaltm1Hlz
Genetic Background: involves: 129P2/OlaHsd

 MP:0005095 decreased T cell proliferation "reduced clonal expansion of naive T cells in response to stimuli" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
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Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: B6.129S7-Itgaltm1Bll

 MP:0008074 increased CD4-positive T cell number "greater number of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

 MP:0008075 decreased CD4-positive T cell number "reduced number of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

 MP:0008078 increased CD8-positive T cell number "greater number of the regulatory subset of T lymphocytes that are involved in MHC class I restricted interactions" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

 MP:0008079 decreased CD8-positive T cell number "reduction in the number of the regulatory subset of T lymphocytes that are involved in MHC class I restricted interactions" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Aqp5tm1Amn/Aqp5tm1Amn
Genetic Background: involves: 129X1/SvJ * Black Swiss

 MP:0008102 lymph node hyperplasia "overdevelopment or increased size, usually due to increased cell number, in the lymph nodes" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Cd14tm1Smg/Cd14tm1Smg
Genetic Background: involves: 129S1/Sv * C57BL/6

 MP:0008553 increased circulating tumor necrosis factor level "greater amount in the blood of a serum glycoprotein produced by activated macrophages and NK cells and involved in initiating local inflammatory responses, particularly by its action on the endothelium of local blood vessels; its actions result in increased vascular permeability and induction of expression of adhesion molecules on the endothelium" [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MESH:D12.644.276.374.500.800]
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Allelic Composition: Itgaltm1Mak/Itgaltm1Mak
Genetic Background: B6.129P2-Itgaltm1Mak

 MP:0008593 increased circulating interleukin-10 level "increase in the amount in the blood of a cytokine produced by a variety of cell types, including T-cells, monocytes, dendritic cells and epithelial cells that exerts a variety of effects on immunoregulation and inflammation" [MESH:D12.644.276.374.465.510]
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Allelic Composition: Itgaltm1Mak/Itgaltm1Mak
Genetic Background: B6.129P2-Itgaltm1Mak

 MP:0008599 increased circulating interleukin-2 level "increase in the amount in the blood of a soluble substance elaborated by antigen- or mitogen-stimulated T-cells which induces DNA synthesis in naive lymphocytes" [MESH:D12.644.276.374.465.502]
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Allelic Composition: Itgaltm1Mak/Itgaltm1Mak
Genetic Background: B6.129P2-Itgaltm1Mak

 MP:0008734 decreased susceptibility to endotoxin shock "less than the expected early reaction of the microcirculation to endotoxins such as LPS, characterized by movement of fluid and leukocytes from the blood into extravascular tissues and often resulting in death" [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"]
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Allelic Composition: Itgaltm1Mak/Itgaltm1Mak
Genetic Background: B6.129P2-Itgaltm1Mak

Allelic Composition: Itgaltm1Mak/Itgal+
Genetic Background: B6.129P2-Itgaltm1Mak

 MP:0009858 abnormal cellular extravasation "any anomaly in the migration of leukocytes from the blood vessels into the surrounding tissue" [GO:0045123]
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Allelic Composition: Itgaltm1Bll/Itgaltm1Bll
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

Allelic Composition: Itgaltm1Hlz/Itgaltm1Hlz
Genetic Background: involves: 129P2/OlaHsd

Allelic Composition: Edil3tm1Tq/Edil3tm1Tq,Itgaltm1Bll/Itgaltm1Bll
Genetic Background: involves: 129 * C57BL/6

 MP:0020333 enhanced leukocyte tethering or rolling "enhancement of the transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation" [GO:0050901, ORCID: orcid.org/0000-0003-4606-0597]
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Allelic Composition: Itgaltm1.1Mshi/Itgaltm1.1Mshi
Genetic Background: involves: C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000001029 Icam2 / P35330 / Intercellular adhesion molecule 2 / P13598*  / reaction / complex
 ENSMUSG00000038235 F11r / O88792 / Junctional adhesion molecule A / Q9Y624* / F11 receptor*  / complex / reaction
 ENSMUSG00000001014 Icam4 / Q9ERM2 / Intercellular adhesion molecule 4 / Q14773* / intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)*  / complex / reaction
 ENSMUSG00000037405 Icam1 / P13597 / intercellular adhesion molecule 1 / P05362*  / complex / reaction
 ENSMUSG00000032174 Icam5 / Q60625 / Intercellular adhesion molecule 5 / Q9UMF0*  / complex / reaction






 

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