ENSG00000176697


Homo sapiens

Features
Gene ID: ENSG00000176697
  
Biological name :BDNF
  
Synonyms : BDNF / brain derived neurotrophic factor / P23560
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p14.1
Gene start: 27654893
Gene end: 27722058
  
Corresponding Affymetrix probe sets: 206382_s_at (Human Genome U133 Plus 2.0 Array)   239367_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000435564
Ensembl peptide - ENSP00000433003
Ensembl peptide - ENSP00000435805
Ensembl peptide - ENSP00000437138
Ensembl peptide - ENSP00000320002
Ensembl peptide - ENSP00000349084
Ensembl peptide - ENSP00000379302
Ensembl peptide - ENSP00000379304
Ensembl peptide - ENSP00000379305
Ensembl peptide - ENSP00000379307
Ensembl peptide - ENSP00000379309
Ensembl peptide - ENSP00000389345
Ensembl peptide - ENSP00000389564
Ensembl peptide - ENSP00000400502
Ensembl peptide - ENSP00000414303
Ensembl peptide - ENSP00000432035
Ensembl peptide - ENSP00000432376
Ensembl peptide - ENSP00000432727
NCBI entrez gene - 627     See in Manteia.
OMIM - 113505
RefSeq - NM_170733
RefSeq - NM_001143805
RefSeq - NM_001143806
RefSeq - NM_001143807
RefSeq - NM_001143808
RefSeq - NM_001143809
RefSeq - NM_001143810
RefSeq - NM_001143811
RefSeq - NM_001143812
RefSeq - NM_001143813
RefSeq - NM_001143814
RefSeq - NM_001143816
RefSeq - NM_001709
RefSeq - NM_170731
RefSeq - NM_170732
RefSeq - NM_170734
RefSeq - NM_170735
RefSeq - XM_011520280
RefSeq Peptide - NP_733931
RefSeq Peptide - NP_001137277
RefSeq Peptide - NP_001137278
RefSeq Peptide - NP_733928
RefSeq Peptide - NP_733929
RefSeq Peptide - NP_733930
RefSeq Peptide - NP_001137279
RefSeq Peptide - NP_001137280
RefSeq Peptide - NP_001137281
RefSeq Peptide - NP_001137282
RefSeq Peptide - NP_001137283
RefSeq Peptide - NP_001137284
RefSeq Peptide - NP_001137285
RefSeq Peptide - NP_001137286
RefSeq Peptide - NP_001137288
RefSeq Peptide - NP_001700
RefSeq Peptide - NP_733927
swissprot - E9PMP3
swissprot - A0A0E3SU01
swissprot - P23560
Ensembl - ENSG00000176697
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bdnfENSDARG00000018817Danio rerio
 BDNFENSGALG00000012163Gallus gallus
 BdnfENSMUSG00000048482Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NTF3 / P20783 / neurotrophin 3ENSG0000018565229
NTF4 / P34130 / neurotrophin 4ENSG0000022595027
NGF / P01138 / nerve growth factorENSG0000013425926


Protein motifs (from Interpro)
Interpro ID Name
 IPR002072  Nerve growth factor-related
 IPR019846  Nerve growth factor conserved site
 IPR020408  Nerve growth factor-like
 IPR020430  Brain-derived neurotrophic factor
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007411 axon guidance TAS
 biological_processGO:0007416 synapse assembly IDA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0010832 negative regulation of myotube differentiation ISS
 biological_processGO:0031547 brain-derived neurotrophic factor receptor signaling pathway TAS
 biological_processGO:0031550 positive regulation of brain-derived neurotrophic factor receptor signaling pathway TAS
 biological_processGO:0043524 negative regulation of neuron apoptotic process IBA
 biological_processGO:0048668 collateral sprouting IDA
 biological_processGO:0048672 positive regulation of collateral sprouting IDA
 biological_processGO:0051965 positive regulation of synapse assembly IDA
 biological_processGO:1900122 positive regulation of receptor binding IDA
 biological_processGO:2000008 regulation of protein localization to cell surface TAS
 cellular_componentGO:0005576 extracellular region IBA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0031410 cytoplasmic vesicle IBA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005169 neurotrophin TRKB receptor binding IBA
 molecular_functionGO:0008083 growth factor activity IBA


Pathways (from Reactome)
Pathway description
BDNF activates NTRK2 (TRKB) signaling
Activated NTRK2 signals through RAS
Activated NTRK2 signals through PLCG1
Activated NTRK2 signals through PI3K
Activated NTRK2 signals through FRS2 and FRS3
Activated NTRK2 signals through FYN
NTRK2 activates RAC1
Activated NTRK2 signals through CDK5


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000062 Ambiguous genitalia 
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 HP:0000153 Abnormality of the mouth "An abnormality of the `mouth` (FMA:49184)." [HPO:probinson]
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 HP:0000232 Everted lower lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000364 Hearing abnormality 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002791 Hypoventilation 
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 HP:0003005 Ganglioneuroma 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004370 Abnormality of temperature regulation 
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 HP:0006747 Ganglioneuroblastoma 
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 HP:0007110 Central hypoventilation 
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 HP:0007299 Dysfunction of lateral corticospinal tracts 
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 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000124181 PLCG1 / P19174 / phospholipase C gamma 1  / complex / reaction
 ENSG00000137218 FRS3 / O43559 / fibroblast growth factor receptor substrate 3  / reaction / complex
 ENSG00000121879 P42336 / PIK3CA / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha  / complex
 ENSG00000156299 TIAM1 / Q13009 / T cell lymphoma invasion and metastasis 1  / reaction / complex
 ENSG00000148053 NTRK2 / Q16620 / neurotrophic receptor tyrosine kinase 2  / reaction / complex
 ENSG00000145675 P27986 / PIK3R1 / phosphoinositide-3-kinase regulatory subunit 1  / complex
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / reaction / complex
 ENSG00000010810 FYN / P06241 / FYN proto-oncogene, Src family tyrosine kinase  / reaction / complex
 ENSG00000164885 CDK5 / Q00535 / cyclin dependent kinase 5  / reaction / complex
 ENSG00000176749 CDK5R1 / Q15078 / cyclin dependent kinase 5 regulatory subunit 1  / complex / reaction
 ENSG00000115904 SOS1 / Q07889 / SOS Ras/Rac guanine nucleotide exchange factor 1  / reaction / complex
 ENSG00000176697 BDNF / P23560 / brain derived neurotrophic factor  / complex
 ENSG00000088538 DOCK3 / Q8IZD9 / dedicator of cytokinesis 3  / complex
 ENSG00000179295 PTPN11 / Q06124 / protein tyrosine phosphatase, non-receptor type 11  / reaction / complex
 ENSG00000273079 GRIN2B / Q13224 / glutamate ionotropic receptor NMDA type subunit 2B  / complex
 ENSG00000109458 GAB1 / Q13480 / GRB2 associated binding protein 1  / complex
 ENSG00000160691 SHC1 / P29353 / SHC adaptor protein 1  / complex / reaction
 ENSG00000166225 FRS2 / Q8WU20 / fibroblast growth factor receptor substrate 2  / reaction / complex






 

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