ENSMUSG00000031558


Mus musculus

Features
Gene ID: ENSMUSG00000031558
  
Biological name :Slit2
  
Synonyms : Q9R1B9 / Slit2 / slit guidance ligand 2
  
Possible biological names infered from orthology : O94813
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: B3
Gene start: 47983138
Gene end: 48307733
  
Corresponding Affymetrix probe sets: 10521759 (MoGene1.0st)   1424659_at (Mouse Genome 430 2.0 Array)   1451430_at (Mouse Genome 430 2.0 Array)   1458140_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000134655
Ensembl peptide - ENSMUSP00000134263
Ensembl peptide - ENSMUSP00000134359
Ensembl peptide - ENSMUSP00000033967
Ensembl peptide - ENSMUSP00000127615
Ensembl peptide - ENSMUSP00000133382
Ensembl peptide - ENSMUSP00000133840
Ensembl peptide - ENSMUSP00000133912
NCBI entrez gene - 20563     See in Manteia.
MGI - MGI:1315205
RefSeq - XM_006503816
RefSeq - NM_001291227
RefSeq - NM_001291228
RefSeq - NM_178804
RefSeq - XM_006503813
RefSeq - XM_006503814
RefSeq - XM_006503815
RefSeq Peptide - NP_001278157
RefSeq Peptide - NP_001278156
RefSeq Peptide - NP_848919
swissprot - G3UY21
swissprot - G3UYX7
swissprot - G3UZ61
swissprot - G3UZW0
swissprot - G3X909
swissprot - G3UWQ3
swissprot - Q9R1B9
swissprot - A0A140T8T2
Ensembl - ENSMUSG00000031558
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slit2ENSDARG00000004246Danio rerio
 SLIT2ENSGALG00000041121Gallus gallus
 SLIT2ENSG00000145147Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Slit1 / Q80TR4 / Slit homolog 1 protein / O75093* / slit guidance ligand 1*ENSMUSG0000002502065
Slit3 / Q9WVB4 / Slit homolog 3 protein / O75094* / slit guidance ligand 3*ENSMUSG0000005642765
1 / Crb1 / Q8VHS2 / P82279* / crumbs 1, cell polarity complex component*ENSMUSG0000006368116
2 / Crb2 / Q80YA8 / Q5IJ48* / crumbs 2, cell polarity complex component*ENSMUSG0000003540314
Dner / Q8JZM4 / Delta and Notch-like epidermal growth factor-related receptor / Q8NFT8* / delta/notch like EGF repeat containing*ENSMUSG0000003676610
Dll3 / O88516 / Delta-like protein 3 / Q9NYJ7* / delta like canonical Notch ligand 3*ENSMUSG000000034367
2 / Dlk2 / Q8K1E3 / Q6UY11* / delta like non-canonical Notch ligand 2*ENSMUSG000000474286
Dlk1 / delta like non-canonical Notch ligand 1 / P80370*ENSMUSG000000408566


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR000742  EGF-like domain
 IPR001611  Leucine-rich repeat
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003645  Follistatin-like, N-terminal
 IPR006207  Cystine knot, C-terminal
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR018097  EGF-like calcium-binding, conserved site
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001656 metanephros development IMP
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001701 in utero embryonic development IMP
 biological_processGO:0001933 negative regulation of protein phosphorylation IEA
 biological_processGO:0002042 cell migration involved in sprouting angiogenesis IEA
 biological_processGO:0002689 negative regulation of leukocyte chemotaxis IEA
 biological_processGO:0006935 chemotaxis IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007409 axonogenesis IMP
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0008045 motor neuron axon guidance IEA
 biological_processGO:0008285 negative regulation of cell proliferation IGI
 biological_processGO:0010593 negative regulation of lamellipodium assembly IEA
 biological_processGO:0010596 negative regulation of endothelial cell migration IEA
 biological_processGO:0010629 negative regulation of gene expression IGI
 biological_processGO:0014912 negative regulation of smooth muscle cell migration IEA
 biological_processGO:0021772 olfactory bulb development IGI
 biological_processGO:0021836 chemorepulsion involved in postnatal olfactory bulb interneuron migration IEA
 biological_processGO:0021952 central nervous system projection neuron axonogenesis IBA
 biological_processGO:0021972 corticospinal neuron axon guidance through spinal cord IEA
 biological_processGO:0022029 telencephalon cell migration IGI
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030308 negative regulation of cell growth IEA
 biological_processGO:0030336 negative regulation of cell migration IEA
 biological_processGO:0030517 negative regulation of axon extension IDA
 biological_processGO:0030837 negative regulation of actin filament polymerization IEA
 biological_processGO:0031290 retinal ganglion cell axon guidance IEA
 biological_processGO:0032870 cellular response to hormone stimulus IEA
 biological_processGO:0033563 dorsal/ventral axon guidance IMP
 biological_processGO:0034260 negative regulation of GTPase activity IEA
 biological_processGO:0035385 Roundabout signaling pathway IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043116 negative regulation of vascular permeability IEA
 biological_processGO:0048754 branching morphogenesis of an epithelial tube IEA
 biological_processGO:0048812 neuron projection morphogenesis IMP
 biological_processGO:0048846 axon extension involved in axon guidance IEA
 biological_processGO:0050919 negative chemotaxis IEA
 biological_processGO:0050929 induction of negative chemotaxis IEA
 biological_processGO:0051058 negative regulation of small GTPase mediated signal transduction IEA
 biological_processGO:0051414 response to cortisol IEA
 biological_processGO:0060603 mammary gland duct morphogenesis IMP
 biological_processGO:0060763 mammary duct terminal end bud growth IMP
 biological_processGO:0061364 apoptotic process involved in luteolysis IEA
 biological_processGO:0070100 negative regulation of chemokine-mediated signaling pathway IEA
 biological_processGO:0071504 cellular response to heparin IEA
 biological_processGO:0071672 negative regulation of smooth muscle cell chemotaxis IEA
 biological_processGO:0071676 negative regulation of mononuclear cell migration IEA
 biological_processGO:0090024 negative regulation of neutrophil chemotaxis IEA
 biological_processGO:0090260 negative regulation of retinal ganglion cell axon guidance IEA
 biological_processGO:0090288 negative regulation of cellular response to growth factor stimulus IEA
 biological_processGO:0098609 cell-cell adhesion IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane TAS
 molecular_functionGO:0005095 GTPase inhibitor activity IEA
 molecular_functionGO:0005102 signaling receptor binding TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008201 heparin binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043237 laminin-1 binding IEA
 molecular_functionGO:0043394 proteoglycan binding IEA
 molecular_functionGO:0045499 chemorepellent activity IMP
 molecular_functionGO:0048495 Roundabout binding IEA


Pathways (from Reactome)
Pathway description
Signaling by ROBO receptors
Role of ABL in ROBO-SLIT signaling
SLIT2:ROBO1 increases RHOA activity
Regulation of expression of SLITs and ROBOs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000284 double outlet right ventricle "both the aorta and the pulmonary trunk originate from the right ventricle, usually in conjunction with a ventricular septal defect" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:67826]
Show

Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0000474 abnormal foregut morphology "malformed cephalic portion of the primitive digestive tube of the embryo" [J:35802]
Show

Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

 MP:0000519 hydronephrosis "dilation of the pelvis and calices of one or both kidneys" [J:56641]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0000527 abnormal kidney development "anomalous differentiation of the paired organs responsible for urine secretion" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

 MP:0000534 abnormal ureter morphology "anomalous structure of the tube that conducts the urine from the renal pelvis to the bladder" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

Allelic Composition: Gdnftm1Rosl/Gdnf+,Slit2tm1Matl/Slit2tm1Matl
Genetic Background: involves: 129S2/SvPas

 MP:0000536 hydroureter "distention of the ureter with urine, due to blockage from any cause" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:Cml, J:13044]
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Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

 MP:0002961 abnormal axon guidance "defect in the signaling mechanisms that allow precise navigation and connections of axonal growth cones to effector tissues " [Principles of Neural Science , 3rd edition:ISBN 0-8385-8034-3]
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Allelic Composition: Ext1tm1Yama/Ext1+,Slit2tm1Matl/Slit2tm1Matl,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * 129S5/SvEvBrd * C57BL/6 * SJL

Allelic Composition: Slit1tm1.1Matl/Slit1tm1.1Matl,Slit2tm1Matl/Slit2tm1Matl,Slit3tm1.1Dor/Slit3tm1.1Dor
Genetic Background: involves: 129S1/Sv * 129S2/SvPas

Allelic Composition: Slit1tm1.1Matl/Slit1tm1.1Matl,Slit2tm1Matl/Slit2tm1Matl,Slit3tm1.1Dor/Slit3+
Genetic Background: involves: 129S1/Sv * 129S2/SvPas

Allelic Composition: Robo3tm1Matl/Robo3tm1Matl,Slit2tm1Matl/Slit2tm1Matl
Genetic Background: involves: 129/Sv * CD-1

Allelic Composition: Robo3tm1Matl/Robo3tm1Matl,Slit1tm1.1Matl/Slit1tm1.1Matl,Slit2tm1Matl/Slit2tm1Matl
Genetic Background: involves: 129/Sv * CD-1

 MP:0003566 abnormal cell adhesion "altered ability of a cell to adhere to another cell or to a non-cellular component of the environment" [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
Show

Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

Allelic Composition: Ntn1Gt(ST629)Byg/Ntn1Gt(ST629)Byg,Slit2tm1Matl/Slit2tm1Matl
Genetic Background: involves: 129P2/OlaHsd * 129S2/SvPas

 MP:0004017 duplex kidney "a kidney that is split into two separate collecting systems; there may be a duplex ureter or a single ureter; may present unilaterally or bilaterally" [rbabiuk:Randall Babiuk, Mouse Genome Informatics Curator]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0004133 heterotaxia "abnormal arrangement of organs or parts of the body in relation to each other" [anna:Anna Anagnostopoulos, Mouse Genome Informatics Curator]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0004274 abnormal embryonic/fetal subventricular zone morphology "any structural anomaly in the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:12637172]
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Allelic Composition: Xisttm1Jae/Xisttm2.1Jae
Genetic Background: involves: 129S4/SvJae

 MP:0005237 abnormal olfactory tract morphology "structural anomaly of the nervelike, white band composed primarily of nerve fibers originating from the mitral cells and tufted cells of the olfactory bulb, but also containing the scattered cells of the anterior olfactory nucleus " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:34460]
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Allelic Composition: Xisttm1Jae/Xisttm2.1Jae
Genetic Background: involves: 129S4/SvJae

Allelic Composition: Slit1tm1.1Matl/Slit1tm1.1Matl,Slit2tm1Matl/Slit2+
Genetic Background: involves: 129S2/SvPas

Allelic Composition: Slit1tm1.1Matl/Slit1+,Slit2tm1Matl/Slit2tm1Matl
Genetic Background: involves: 129S2/SvPas

 MP:0006032 abnormal ureteric bud morphology "anomaly in the formation or development of the ureteric bud that with the metanephric mesenchyme gives rise to the kidneys " [smb:Susan M Bello, Mouse Genome Informatics Curator, J:57313:]
Show

Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

 MP:0008415 abnormal neurite morphology "any structural anomaly of a neuronal process, either a dendrite or an axon in vivo, or a filamentous projection from a neuron such as is seen in tissue culture" [PMID:12951572]
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Allelic Composition: Xisttm1Jae/Xisttm2.1Jae
Genetic Background: involves: 129S4/SvJae

 MP:0008528 polycystic kidney "the development of innumerable cysts in the kidneys filled with fluid replacing much of the mass of the kidneys leading to reduction in kidney function and frequently kidney failure" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0008572 abnormal Purkinje cell dendrite morphology "any strucutral anomaly of the Purkinje cell body projections with hundreds of parallel spiny branches reaching up into the molecular layer" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Robo2tm1Rilm/Robo2tm1Rilm,Tg(Pcp2-cre)2Mpin/?
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * CD-1

Allelic Composition: Slit2tm1.1Ics/Slit2tm1.1Ics,Tg(Pcp2-cre)2Mpin/?
Genetic Background: involves: 129S1/Sv * 129S2/SvPas * 129X1/SvJ * C57BL/6 * CD-1

 MP:0009503 abnormal mammary gland duct morphology "any structural anomaly of the canals that lead from the lobes of the mammary gland to the tip of the nipple and are responsible for carrying milk toward the nipple in a lactating female" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

Allelic Composition: Ntn1Gt(ST629)Byg/Ntn1Gt(ST629)Byg,Slit2tm1Matl/Slit2tm1Matl
Genetic Background: involves: 129P2/OlaHsd * 129S2/SvPas

Allelic Composition: Slit2tm1Matl/Slit2tm1Matl,Slit3tm1.1Dor/Slit3tm1.1Dor
Genetic Background: involves: 129S1/Sv * 129S2/SvPas

 MP:0009678 abnormal spinal cord lateral column morphology "any structural anomaly of the region of white matter of the spinal cord that is located between the dorsal and ventral spinal roots" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
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Allelic Composition: Slit1tm1.1Matl/Slit1tm1.1Matl,Slit2tm1Matl/Slit2tm1Matl,Slit3tm1.1Dor/Slit3tm1.1Dor
Genetic Background: involves: 129S1/Sv * 129S2/SvPas

Allelic Composition: Slit1tm1.1Matl/Slit1tm1.1Matl,Slit2tm1Matl/Slit2tm1Matl,Slit3tm1.1Dor/Slit3+
Genetic Background: involves: 129S1/Sv * 129S2/SvPas

 MP:0009695 abnormal spinal cord ventral commissure morphology "any structural anomaly of the band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
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Allelic Composition: Slit1tm1.1Matl/Slit1tm1.1Matl,Slit2tm1Matl/Slit2tm1Matl,Slit3tm1.1Dor/Slit3+
Genetic Background: involves: 129S1/Sv * 129S2/SvPas

 MP:0009944 abnormal olfactory lobe morphology 
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Allelic Composition: Xisttm1Jae/Xisttm2.1Jae
Genetic Background: involves: 129S4/SvJae

 MP:0010173 increased mammary gland epithelium proliferation "increase in the expansion rate of the cells of the mammary gland epithelium by cell division" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Slit2tm1Matl/Slit2tm1Matl,Slit3tm1.1Dor/Slit3tm1.1Dor
Genetic Background: involves: 129S1/Sv * 129S2/SvPas

 MP:0010418 perimembraneous ventricular septal defect "abnormal communications between the two lower chambers of the heart, occurring in the membranous septum with defects in the adjacent muscular portion of the septum; it is generally located in the LV outflow tract just below the aortic valve, associated with pouches or aneurysms of the septal leaflet of the tricuspid valve, which may partially or completely close the defect; an LV-to-RA shunt may also be associated with this defect" [http://emedicine.medscape.com]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0010420 muscular ventricular septal defect "abnormal communications between the two lower chambers of the heart, involving the muscular septum and often occurring as multiple communications, and includes central muscular or midmuscular, apical, or marginal communications when the defect is along the RV-septal junction; any single defect observed from the LV aspect may have several openings on the RV aspect" [http://emedicine.medscape.com]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0010422 heart right ventricle hypoplasia "underdevelopment or reduced size of the heart right ventricle, often due to a reduced number of cells" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0010466 vascular ring "the trachea and esophagus are completely encircled by connected segments of the aortic arch and its branches" [http://emedicine.medscape.com]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0010485 aortic arch hypoplasia "underdevelopment or reduced size of the aortic arch, usually due to reduced cell number" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Adartm2Knk/Adar+
Genetic Background: chimera involves: 129S1/Sv * 129X1/SvJ * FVB/N

 MP:0011089 complete perinatal lethality "death of all organisms of a given genotype in a population within the perinatal period (Mus: E18.5 through postnatal day 1)" [MGI:csmith]
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Allelic Composition: Xisttm1Jae/Xisttm2.1Jae
Genetic Background: involves: 129S4/SvJae

 MP:0011090 partial perinatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms within the perinatal period (Mus: E18.5 through postnatal day 1)" [MGI:csmith]
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Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

 MP:0011334 abnormal nephrogenic zone morphology "any structural anomaly in the region found at the periphery of the developing metanephros within which the metanephric mesenchyme aggregates around the tips of the ureteric tree to form the nephrons; in rodents including mice, this region normally disappears within the first postnatal week when nephrogenesis ceases and only mature nephrons are present; in humans, it is lost by 36 weeks of gestation" [PMID:17452023]
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Allelic Composition: Krt71Rgsc689/?
Genetic Background: involves: C57BL/6J * DBA/2J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000021262 Evl / P70429 / Ena/VASP-like protein / Q9UI08* / Enah/Vasp-like*  / complex
 ENSMUSG00000022883 Robo1 / roundabout guidance receptor 1 / Q9Y6N7*  / complex / reaction
 ENSMUSG00000030403 Vasp / P70460 / vasodilator-stimulated phosphoprotein / P50552*  / complex
 ENSMUSG00000045382 Cxcr4 / Mus musculus chemokine (C-X-C motif) receptor 4 (Cxcr4), transcript variant 2, mRNA. / P61073* / C-X-C motif chemokine receptor 4*  / complex / reaction
 ENSMUSG00000026596 Abl2 / v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) / P42684* / ABL proto-oncogene 2, non-receptor tyrosine kinase*  / reaction / complex
 ENSMUSG00000026842 Abl1 / P00520 / c-abl oncogene 1, non-receptor tyrosine kinase / P00519* / ABL proto-oncogene 1, non-receptor tyrosine kinase*  / complex / reaction
 ENSMUSG00000061353 Cxcl12 / P40224 / Stromal cell-derived factor 1 / P48061* / C-X-C motif chemokine ligand 12*  / reaction / complex
 ENSMUSG00000034220 Gpc1 / Q9QZF2 / glypican 1 / P35052*  / complex / reaction
 ENSMUSG00000022995 Enah / Q03173 / ENAH, actin regulator / Q8N8S7*  / complex
 ENSMUSG00000039952 Dag1 / Q62165 / Dystroglycan Alpha-dystroglycan Beta-dystroglycan / Q14118* / dystroglycan 1*  / reaction / complex






 

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