ENSG00000069974


Homo sapiens

Features
Gene ID: ENSG00000069974
  
Biological name :RAB27A
  
Synonyms : P51159 / RAB27A / RAB27A, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q21.3
Gene start: 55202966
Gene end: 55319113
  
Corresponding Affymetrix probe sets: 209514_s_at (Human Genome U133 Plus 2.0 Array)   209515_s_at (Human Genome U133 Plus 2.0 Array)   210951_x_at (Human Genome U133 Plus 2.0 Array)   222294_s_at (Human Genome U133 Plus 2.0 Array)   235766_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457595
Ensembl peptide - ENSP00000457517
Ensembl peptide - ENSP00000458127
Ensembl peptide - ENSP00000337761
Ensembl peptide - ENSP00000379601
Ensembl peptide - ENSP00000454695
Ensembl peptide - ENSP00000455012
Ensembl peptide - ENSP00000456059
Ensembl peptide - ENSP00000456536
NCBI entrez gene - 5873     See in Manteia.
OMIM - 603868
RefSeq - XM_011521856
RefSeq - NM_004580
RefSeq - NM_183234
RefSeq - NM_183235
RefSeq - NM_183236
RefSeq - XM_005254576
RefSeq - XM_011521852
RefSeq - XM_011521854
RefSeq - XM_011521855
RefSeq Peptide - NP_004571
RefSeq Peptide - NP_899058
RefSeq Peptide - NP_899059
RefSeq Peptide - NP_899057
swissprot - H3BUD9
swissprot - H3BVH7
swissprot - A2RU94
swissprot - P51159
swissprot - H3BN55
swissprot - H3BS49
swissprot - H3BU81
Ensembl - ENSG00000069974
  
Related genetic diseases (OMIM): 607624 - Griscelli syndrome, type 2, 607624
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab27aENSDARG00000103935Danio rerio
 RAB27AENSGALG00000004435Gallus gallus
 Q9ERI2ENSMUSG00000032202Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O00194 / RAB27B / RAB27B, member RAS oncogene familyENSG0000004135371
RAB3A / P20336 / RAB3A, member RAS oncogene familyENSG0000010564940
RAB3B / P20337 / RAB3B, member RAS oncogene familyENSG0000016921340
RAB3C / Q96E17 / RAB3C, member RAS oncogene familyENSG0000015293240
RAB8A / P61006 / RAB8A, member RAS oncogene familyENSG0000016746139
RAB3D / O95716 / RAB3D, member RAS oncogene familyENSG0000010551439
RAB8B / Q92930 / RAB8B, member RAS oncogene familyENSG0000016612838
RAB10 / P61026 / RAB10, member RAS oncogene familyENSG0000008473337
RAB13 / P51153 / RAB13, member RAS oncogene familyENSG0000014354536
RASEF / Q8IZ41 / RAS and EF-hand domain containingENSG0000016510536
RAB44 / RAB44, member RAS oncogene familyENSG0000025558734
RAB15 / P59190 / RAB15, member RAS oncogene familyENSG0000013999832
RAB12 / Q6IQ22 / RAB12, member RAS oncogene familyENSG0000020641830


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006605 protein targeting IEA
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0007596 blood coagulation IEA
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0019882 antigen processing and presentation IMP
 biological_processGO:0030318 melanocyte differentiation IEA
 biological_processGO:0032400 melanosome localization IMP
 biological_processGO:0032402 melanosome transport NAS
 biological_processGO:0036257 multivesicular body organization IMP
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0043316 cytotoxic T cell degranulation IEA
 biological_processGO:0043320 natural killer cell degranulation IEA
 biological_processGO:0043473 pigmentation IEA
 biological_processGO:0045921 positive regulation of exocytosis IMP
 biological_processGO:0048489 synaptic vesicle transport TAS
 biological_processGO:0050766 positive regulation of phagocytosis IMP
 biological_processGO:0051875 pigment granule localization IEA
 biological_processGO:0051904 pigment granule transport IEA
 biological_processGO:0071985 multivesicular body sorting pathway IMP
 biological_processGO:0097278 complement-dependent cytotoxicity IMP
 biological_processGO:1903307 positive regulation of regulated secretory pathway IMP
 biological_processGO:1903428 positive regulation of reactive oxygen species biosynthetic process IMP
 biological_processGO:1903435 positive regulation of constitutive secretory pathway IMP
 biological_processGO:1990182 exosomal secretion IMP
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0030141 secretory granule IBA
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0030667 secretory granule membrane IEA
 cellular_componentGO:0032585 multivesicular body membrane IDA
 cellular_componentGO:0033093 Weibel-Palade body IEA
 cellular_componentGO:0033162 melanosome membrane TAS
 cellular_componentGO:0035580 specific granule lumen TAS
 cellular_componentGO:0042470 melanosome IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0070382 exocytic vesicle IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding ISS
 molecular_functionGO:0019003 GDP binding IDA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0031489 myosin V binding IEA


Pathways (from Reactome)
Pathway description
Insulin processing
Neutrophil degranulation
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000967 Petechiae 
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 HP:0001008 Accumulation of melanosomes in melanocytes 
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 HP:0001010 Hypopigmentation of the skin 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001317 Abnormality of the cerebellum 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001875 Neutropenia 
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 HP:0001876 Pancytopenia 
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 HP:0001945 Fever 
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 HP:0002017 Nausea and vomiting 
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 HP:0002113 Pulmonary infiltrates 
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 HP:0002216 Premature graying of hair 
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 HP:0002218 Silver-gray hair 
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 HP:0002220 Melanin pigment aggregation in hair shafts 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002344 Progressive neurologic deterioration 
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 HP:0002716 Lymphadenopathy 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002721 Immunodeficiency 
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 HP:0002972 Reduced delayed hypersensitivity 
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 HP:0003077 Hyperlipidemia 
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 HP:0003593 Early onset 
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 HP:0003819 Death in childhood 
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 HP:0005599 Hair hypopigmentation 
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 HP:0007443 Partial albinism 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0012156 Hemophagocytosis "Phagocytosis by macrophages of erythrocytes, leukocytes, platelets, and their precursors in bone marrow and other tissues." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000110514 MADD / Q8WXG6 / MAP kinase activating death domain  / reaction
 ENSG00000203668 CHML / P26374 / CHM like, Rab escort protein 2  / complex
 ENSG00000188419 CHM / P24386 / CHM, Rab escort protein 1  / complex
 ENSG00000170011 MYRIP / Q8NFW9 / myosin VIIA and Rab interacting protein  / complex
 ENSG00000203879 GDI1 / P31150 / GDP dissociation inhibitor 1  / complex
 ENSG00000197535 MYO5A / Q9Y4I1 / myosin VA  / complex
 ENSG00000057608 GDI2 / P50395 / GDP dissociation inhibitor 2  / complex






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr