ENSG00000141543


Homo sapiens

Features
Gene ID: ENSG00000141543
  
Biological name :EIF4A3
  
Synonyms : EIF4A3 / eukaryotic translation initiation factor 4A3 / P38919
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q25.3
Gene start: 80135214
Gene end: 80147183
  
Corresponding Affymetrix probe sets: 201303_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000460439
Ensembl peptide - ENSP00000269349
NCBI entrez gene - 9775     See in Manteia.
OMIM - 608546
RefSeq - XM_011525522
RefSeq - NM_014740
RefSeq Peptide - NP_055555
swissprot - A0A024R8W0
swissprot - P38919
swissprot - I3L3H2
Ensembl - ENSG00000141543
  
Related genetic diseases (OMIM): 268305 - Robin sequence with cleft mandible and limb anomalies, 268305
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 eif4a3ENSDARG00000102978Danio rerio
 EIF4A3ENSGALG00000008530Gallus gallus
 Eif4a3ENSMUSG00000025580Mus musculus
 Gm5580ENSMUSG00000107906Mus musculus
 Gm8994ENSMUSG00000094973Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EIF4A1 / P60842 / eukaryotic translation initiation factor 4A1ENSG0000016196066
EIF4A2 / Q14240 / eukaryotic translation initiation factor 4A2ENSG0000015697666


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0008306 associative learning IEA
 biological_processGO:0008380 RNA splicing IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0017148 negative regulation of translation IDA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0035640 exploration behavior IEA
 biological_processGO:0045727 positive regulation of translation IMP
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IMP
 biological_processGO:0051028 mRNA transport IEA
 biological_processGO:0072715 cellular response to selenite ion IEA
 biological_processGO:0090394 negative regulation of excitatory postsynaptic potential IEA
 biological_processGO:1902415 regulation of mRNA binding IEA
 biological_processGO:1904570 negative regulation of selenocysteine incorporation IEA
 biological_processGO:1904574 negative regulation of selenocysteine insertion sequence binding IEA
 biological_processGO:1990416 cellular response to brain-derived neurotrophic factor stimulus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0035145 exon-exon junction complex IDA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IDA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IDA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008143 poly(A) binding IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0035368 selenocysteine insertion sequence binding IEA
 molecular_functionGO:0035613 RNA stem-loop binding IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
ISG15 antiviral mechanism
Transport of Mature mRNA derived from an Intron-Containing Transcript
Deadenylation of mRNA
mRNA Splicing - Major Pathway
mRNA 3-end processing
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000201 Pierre-Robin sequence 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000308 Microretrognathia 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000448 Prominent nose 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0003038 Fibular hypoplasia "Underdevelopment of the fibula." [HPO:curators]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005736 Hypoplastic tibia 
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 HP:0006355 Absent lower central incisors 
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 HP:0008744 Abnormal aryepiglottic folds 
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 HP:0008753 Absent/abnormal epiglottis 
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 HP:0008807 Acetabular dysplasia 
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 HP:0009094 Cleft lower alveolar ridge 
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 HP:0009486 Radial deviation of the hand "An abnormal position of the hand in which the wrist is bent toward the radius (i.e., toward the thumb)." [HPO:curators]
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 HP:0009623 Proximally placed thumb "Proximally displaced thumb." [HPO:curators]
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 HP:0009778 Hypoplastic/small thumb 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010752 Cleft mandible 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0030043 Hip Subluxation "A partial dislocation of the hip joint, whereby the head of the femur is partially displaced from the socket." []
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 HP:0100499 Tibial deviation of toes 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000138646 HERC5 / Q9UII4 / HECT and RLD domain containing E3 ubiquitin protein ligase 5  / reaction
 ENSG00000075151 EIF4G3 / O43432 / eukaryotic translation initiation factor 4 gamma 3  / complex
 ENSG00000135930 EIF4E2 / O60573 / eukaryotic translation initiation factor 4E family member 2  / reaction
 ENSG00000125351 UPF3B / Q9BZI7 / UPF3B, regulator of nonsense mediated mRNA decay  / complex
 ENSG00000162385 MAGOH / P61326 / mago homolog, exon junction complex core component  / complex
 ENSG00000205937 RNPS1 / Q15287 / RNA binding protein with serine rich domain 1  / complex
 ENSG00000265241 RBM8A / Q9Y5S9 / RNA binding motif protein 8A  / complex
 ENSG00000151461 UPF2 / Q9HAU5 / UPF2, regulator of nonsense mediated mRNA decay  / complex
 ENSG00000108349 CASC3 / O15234 / cancer susceptibility 3  / complex
 ENSG00000111196 MAGOHB / Q96A72 / mago homolog B, exon junction complex core component  / complex
 ENSG00000156587 O14933 / UBE2L6 / ubiquitin conjugating enzyme E2 L6  / reaction
 ENSG00000163412 EIF4E3 / Q8N5X7 / eukaryotic translation initiation factor 4E family member 3  / complex
 ENSG00000151247 EIF4E / P06730 / eukaryotic translation initiation factor 4E  / complex
 ENSG00000110321 EIF4G2 / P78344 / eukaryotic translation initiation factor 4 gamma 2  / complex
 ENSG00000114867 EIF4G1 / Q04637 / eukaryotic translation initiation factor 4 gamma 1  / complex
 ENSG00000169062 UPF3A / Q9H1J1 / UPF3A, regulator of nonsense mediated mRNA decay  / complex
 ENSG00000187608 ISG15 / P05161 / ISG15 ubiquitin-like modifier  / reaction
 ENSG00000166233 ARIH1 / Q9Y4X5 / ariadne RBR E3 ubiquitin protein ligase 1  / reaction






 

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