ENSG00000162711


Homo sapiens

Features
Gene ID: ENSG00000162711
  
Biological name :NLRP3
  
Synonyms : NLR family pyrin domain containing 3 / NLRP3 / Q96P20
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q44
Gene start: 247416156
Gene end: 247449108
  
Corresponding Affymetrix probe sets: 207075_at (Human Genome U133 Plus 2.0 Array)   216015_s_at (Human Genome U133 Plus 2.0 Array)   216016_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494332
Ensembl peptide - ENSP00000294752
Ensembl peptide - ENSP00000337383
Ensembl peptide - ENSP00000355452
Ensembl peptide - ENSP00000355453
Ensembl peptide - ENSP00000375703
Ensembl peptide - ENSP00000493674
Ensembl peptide - ENSP00000493937
Ensembl peptide - ENSP00000375704
NCBI entrez gene - 114548     See in Manteia.
OMIM - 606416
RefSeq - XM_017000184
RefSeq - NM_001079821
RefSeq - NM_001127461
RefSeq - NM_001127462
RefSeq - NM_001243133
RefSeq - NM_004895
RefSeq - NM_183395
RefSeq - XM_011544048
RefSeq - XM_011544053
RefSeq - XM_011544055
RefSeq - XM_017000181
RefSeq - XM_017000182
RefSeq - XM_017000183
RefSeq Peptide - NP_001073289
RefSeq Peptide - NP_001120933
RefSeq Peptide - NP_001120934
RefSeq Peptide - NP_001230062
RefSeq Peptide - NP_004886
RefSeq Peptide - NP_899632
swissprot - Q96P20
Ensembl - ENSG00000162711
  
Related genetic diseases (OMIM): 607115 - CINCA syndrome, 607115
  617772 - Deafness, autosomal dominant 34, with or without inflammation, 617772
  120100 - Familial cold inflammatory syndrome 1, 120100
  148200 - Keratoendothelitis fugax hereditaria, 148200
  191900 - Muckle-Wells syndrome, 191900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FO704635.1ENSDARG00000105141Danio rerio
 nlrb5ENSDARG00000090699Danio rerio
 si:ch211-66k16.2ENSDARG00000095634Danio rerio
 si:ch211-66k16.28ENSDARG00000088423Danio rerio
 Nlrp3ENSMUSG00000032691Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NLRP12 / P59046 / NLR family pyrin domain containing 12ENSG0000014240548
NLRP14 / Q86W24 / NLR family pyrin domain containing 14ENSG0000015807736
NLRP2 / Q9NX02 / NLR family pyrin domain containing 2ENSG0000002255632
NLRP4 / Q96MN2 / NLR family pyrin domain containing 4ENSG0000016050532
NLRP1 / Q9C000 / NLR family pyrin domain containing 1ENSG0000009159231
NLRP7 / Q8WX94 / NLR family pyrin domain containing 7ENSG0000016763431
NLRP9 / Q7RTR0 / NLR family pyrin domain containing 9ENSG0000018579231
NLRP8 / Q86W28 / NLR family pyrin domain containing 8ENSG0000017970930
NLRP13 / Q86W25 / NLR family pyrin domain containing 13ENSG0000017357229
NLRP5 / P59047 / NLR family pyrin domain containing 5ENSG0000017148729
NLRP6 / P59044 / NLR family pyrin domain containing 6ENSG0000017488528
NLRP11 / P59045 / NLR family pyrin domain containing 11ENSG0000017987326
NLRP10 / Q86W26 / NLR family pyrin domain containing 10ENSG0000018226122
RNH1 / P13489 / ribonuclease/angiogenin inhibitor 1ENSG0000002319113


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR004020  DAPIN domain
 IPR007111  NACHT nucleoside triphosphatase
 IPR011029  Death-like domain superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR029495  NACHT-associated domain
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002374 cytokine secretion involved in immune response IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002674 negative regulation of acute inflammatory response IMP
 biological_processGO:0002830 positive regulation of type 2 immune response ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006915 apoptotic process NAS
 biological_processGO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0006952 defense response TAS
 biological_processGO:0006954 inflammatory response IMP
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0009595 detection of biotic stimulus TAS
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0032088 negative regulation of NF-kappaB transcription factor activity IDA
 biological_processGO:0032611 interleukin-1 beta production IEA
 biological_processGO:0032621 interleukin-18 production IEA
 biological_processGO:0032736 positive regulation of interleukin-13 production IEA
 biological_processGO:0032753 positive regulation of interleukin-4 production ISS
 biological_processGO:0032754 positive regulation of interleukin-5 production IEA
 biological_processGO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IDA
 biological_processGO:0044546 NLRP3 inflammasome complex assembly IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045630 positive regulation of T-helper 2 cell differentiation ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0050701 interleukin-1 secretion IEA
 biological_processGO:0050713 negative regulation of interleukin-1 beta secretion IMP
 biological_processGO:0050718 positive regulation of interleukin-1 beta secretion IDA
 biological_processGO:0050727 regulation of inflammatory response IEA
 biological_processGO:0050728 negative regulation of inflammatory response IMP
 biological_processGO:0050830 defense response to Gram-positive bacterium IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IPI
 biological_processGO:0051259 protein complex oligomerization TAS
 biological_processGO:0051607 defense response to virus IEA
 biological_processGO:0071222 cellular response to lipopolysaccharide IMP
 biological_processGO:0071224 cellular response to peptidoglycan IEA
 biological_processGO:2000321 positive regulation of T-helper 17 cell differentiation IEA
 biological_processGO:2000553 positive regulation of T-helper 2 cell cytokine production ISS
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0061702 inflammasome complex IEA
 cellular_componentGO:0072559 NLRP3 inflammasome complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008134 transcription factor binding ISS
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042834 peptidoglycan binding TAS
 molecular_functionGO:0043565 sequence-specific DNA binding ISS


Pathways (from Reactome)
Pathway description
Metalloprotease DUBs
The NLRP3 inflammasome


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000078 Abnormality of the genital tract 
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 HP:0000083 Renal failure 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000153 Abnormality of the mouth "An abnormality of the `mouth` (FMA:49184)." [HPO:probinson]
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 HP:0000174 Abnormality of palate "Any abnormality of the `palate` (FMA:54549), i.e., of roof of the mouth)." [HPO:probinson]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000366 Abnormality of the nose 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000408 Hearing loss, sensorineural, progressive 
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 HP:0000491 Keratitis "Inflammation of the cornea." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000538 Pseudopapilledema 
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 HP:0000554 Uveitis "Inflammation of one or all portions of the uveal tract." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000648 Optic atrophy 
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 HP:0000823 Delayed puberty 
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 HP:0000951 Abnormality of the skin "An abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000979 Purpura 
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001025 Urticaria 
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001287 Meningitis 
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 HP:0001369 Arthritis 
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001476 Delayed closure of the anterior fontanelle "A delay in closure (ossification) of the anterior fontanelle, which generally undergoes closure around the 18th month of life." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001622 Premature birth 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001769 Broad feet "Increased width of the feet." [HPO:curators]
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 HP:0001872 Abnormality of thrombocytes 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001903 Anemia 
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 HP:0001917 Renal amyloidosis 
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 HP:0001944 Dehydration 
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 HP:0001945 Fever 
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 HP:0001954 Fever, episodic "Periodic (episodic or recurrent) bouts of fever that do not have an infectious cause." [HPO:curators]
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 HP:0001959 Polydipsia 
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 HP:0001974 Leukocytosis "An abnormal increase in the number of `leukocytes` (CL:0000738) in the `blood` (FMA:9670)." [HPO:probinson]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002027 Abdominal pain 
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 HP:0002076 Migraine 
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 HP:0002091 Restrictive lung disease 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002516 Increased intracranial pressure 
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 HP:0002633 Vasculitis 
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 HP:0002652 Skeletal dysplasia 
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 HP:0002716 Lymphadenopathy 
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 HP:0002829 Arthralgia 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003565 Elevated erythrocyte sedimentation rate 
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 HP:0003593 Early onset 
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 HP:0003621 Juvenile onset 
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 HP:0004299 Hernia of the abdominal wall 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
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 HP:0006824 Cranial nerve paralysis 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0011107 Recurrent aphthous stomatitis "Recurrent episodes of ulceration of the oral mucosa." [HPO:probinson]
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 HP:0011227 Elevated C-reactive protein level "An abnormal elevation of the C-reactive protein level in serum." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012534 Dysesthesia "Abnormal sensations with no apparent physical cause that are painful or unpleasant." [ORCID:0000-0001-5208-3432]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100534 Episcleritis 
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 HP:0100654 Retrobulbar optic neuritis "`Optic neuritis`(HP:0100653) that occurs in the section of the optic nerve located behind the eyebal." [HPO:sdoelken]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000103490 PYCARD / Q9ULZ3 / PYD and CARD domain containing  / reaction / complex
 ENSG00000162711 NLRP3 / Q96P20 / NLR family pyrin domain containing 3  / -
 ENSG00000265972 TXNIP / Q9H3M7 / thioredoxin interacting protein  / reaction / complex
 ENSG00000105393 BABAM1 / Q9NWV8 / BRISC and BRCA1 A complex member 1  / complex
 ENSG00000165660 Q15018 / ABRAXAS2 / abraxas 2, BRISC complex subunit  / complex
 ENSG00000185515 BRCC3 / P46736 / BRCA1/BRCA2-containing complex subunit 3  / complex
 ENSG00000096384 P08238 / HSP90AB1 / heat shock protein 90 alpha family class B member 1  / complex / reaction / -
 ENSG00000165416 SUGT1 / Q9Y2Z0 / SGT1 homolog, MIS12 kinetochore complex assembly cochaperone  / - / reaction / complex
 ENSG00000142192 APP / P05067 / amyloid beta precursor protein  / - / complex
 ENSG00000137752 CASP1 / P29466 / caspase 1  / reaction / complex
 ENSG00000158019 BABAM2 / Q9NXR7 / BRISC and BRCA1 A complex member 2  / complex






 

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