ENSG00000038382


Homo sapiens

Features
Gene ID: ENSG00000038382
  
Biological name :TRIO
  
Synonyms : O75962 / TRIO / trio Rho guanine nucleotide exchange factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: p15.2
Gene start: 14143702
Gene end: 14532128
  
Corresponding Affymetrix probe sets: 208178_x_at (Human Genome U133 Plus 2.0 Array)   209010_s_at (Human Genome U133 Plus 2.0 Array)   209011_at (Human Genome U133 Plus 2.0 Array)   209012_at (Human Genome U133 Plus 2.0 Array)   209013_x_at (Human Genome U133 Plus 2.0 Array)   216697_at (Human Genome U133 Plus 2.0 Array)   216700_at (Human Genome U133 Plus 2.0 Array)   231403_at (Human Genome U133 Plus 2.0 Array)   244527_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000339299
Ensembl peptide - ENSP00000421555
Ensembl peptide - ENSP00000492184
Ensembl peptide - ENSP00000483869
Ensembl peptide - ENSP00000445592
Ensembl peptide - ENSP00000426342
Ensembl peptide - ENSP00000339291
NCBI entrez gene - 7204     See in Manteia.
OMIM - 601893
RefSeq - XM_011514107
RefSeq - XM_011514109
RefSeq - XM_011514110
RefSeq - XM_017009801
RefSeq - XM_017009802
RefSeq - XM_017009803
RefSeq - XM_011514108
RefSeq - NM_007118
RefSeq Peptide - NP_009049
swissprot - O75962
swissprot - E7EPJ7
swissprot - A0A1W2PRD7
swissprot - A0A087X139
swissprot - F5H228
swissprot - E7EWP2
Ensembl - ENSG00000038382
  
Related genetic diseases (OMIM): 617061 - Mental retardation, autosomal dominant 44, 617061
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trioaENSDARG00000019426Danio rerio
 triobENSDARG00000000370Danio rerio
 TRIOENSGALG00000031495Gallus gallus
 TrioENSMUSG00000022263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KALRN / O60229 / kalirin RhoGEF kinaseENSG0000016014541
MCF2L / O15068 / MCF.2 cell line derived transforming sequence likeENSG0000012621710
Q86VW2 / ARHGEF25 / Rho guanine nucleotide exchange factor 25ENSG0000024077110
MCF2 / P10911 / MCF.2 cell line derived transforming sequenceENSG000001019779
MCF2L2 / Q86YR7 / MCF.2 cell line derived transforming sequence-like 2ENSG000000535249
Q9ULL1 / PLEKHG1 / pleckstrin homology and RhoGEF domain containing G1ENSG000001202787
Q9H7P9 / PLEKHG2 / pleckstrin homology and RhoGEF domain containing G2ENSG000000909246
A1L390 / PLEKHG3 / pleckstrin homology and RhoGEF domain containing G3ENSG000001268226


Protein motifs (from Interpro)
Interpro ID Name
 IPR000219  Dbl homology (DH) domain
 IPR000719  Protein kinase domain
 IPR001251  CRAL-TRIO lipid binding domain
 IPR001452  SH3 domain
 IPR001849  Pleckstrin homology domain
 IPR002017  Spectrin repeat
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR011993  PH-like domain superfamily
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR018159  Spectrin/alpha-actinin
 IPR028570  Triple functional domain protein
 IPR035899  Dbl homology (DH) domain superfamily
 IPR036028  SH3-like domain superfamily
 IPR036179  Immunoglobulin-like domain superfamily
 IPR036865  CRAL-TRIO lipid binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0007185 transmembrane receptor protein tyrosine phosphatase signaling pathway TAS
 biological_processGO:0007186 G-protein coupled receptor signaling pathway TAS
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0035023 regulation of Rho protein signal transduction IEA
 biological_processGO:0043065 positive regulation of apoptotic process TAS
 biological_processGO:0045599 negative regulation of fat cell differentiation ISS
 biological_processGO:0051056 regulation of small GTPase mediated signal transduction TAS
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005089 Rho guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
NRAGE signals death through JNK
Rho GTPase cycle
G alpha (q) signalling events
G alpha (12/13) signalling events
DCC mediated attractive signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000574 Thick eyebrows 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000678 Dental overcrowding 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000722 Obsessive-compulsive disorder 
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 HP:0000750 Impaired language development 
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 HP:0001156 Brachydactyly 
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 HP:0001182 Tapered fingers 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001270 Motor retardation 
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 HP:0002465 Poor speech 
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 HP:0002719 Recurrent infections 
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 HP:0002808 Kyphosis 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003812 Phenotypic variability 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000065320 NTN1 / O95631 / netrin 1  / reaction / complex
 ENSG00000088256 GNA11 / P29992 / G protein subunit alpha 11  / reaction / complex
 ENSG00000010810 FYN / P06241 / FYN proto-oncogene, Src family tyrosine kinase  / reaction / complex
 ENSG00000106299 WASL / O00401 / Wiskott-Aldrich syndrome like  / complex / reaction
 ENSG00000060558 GNA15 / P30679 / G protein subunit alpha 15  / complex / reaction
 ENSG00000156052 GNAQ / P50148 / G protein subunit alpha q  / reaction / complex
 ENSG00000158092 NCK1 / P16333 / NCK adaptor protein 1  / reaction / complex
 ENSG00000187323 DCC / P43146 / DCC netrin 1 receptor  / complex / reaction
 ENSG00000163995 ABLIM2 / Q6H8Q1 / actin binding LIM protein family member 2  / reaction / complex
 ENSG00000173210 ABLIM3 / O94929 / actin binding LIM protein family member 3  / complex / reaction
 ENSG00000136238 RAC1 / P63000 / Rac family small GTPase 1  / complex / reaction
 ENSG00000099204 ABLIM1 / O14639 / actin binding LIM protein 1  / complex / reaction
 ENSG00000070831 CDC42 / P60953 / cell division cycle 42  / reaction / complex
 ENSG00000156049 GNA14 / O95837 / G protein subunit alpha 14  / complex / reaction
 ENSG00000169398 PTK2 / Q05397 / protein tyrosine kinase 2  / reaction / complex
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / complex / reaction






 

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