ENSG00000157404


Homo sapiens

Features
Gene ID: ENSG00000157404
  
Biological name :KIT
  
Synonyms : KIT / KIT proto-oncogene receptor tyrosine kinase / P10721
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q12
Gene start: 54657918
Gene end: 54740715
  
Corresponding Affymetrix probe sets: 205051_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000390987
Ensembl peptide - ENSP00000288135
NCBI entrez gene - 3815     See in Manteia.
OMIM - 164920
RefSeq - XM_017008180
RefSeq - NM_000222
RefSeq - NM_001093772
RefSeq - XM_005265741
RefSeq - XM_005265742
RefSeq - XM_017008178
RefSeq - XM_017008179
RefSeq - XM_005265740
RefSeq Peptide - NP_000213
RefSeq Peptide - NP_001087241
swissprot - P10721
swissprot - A0A024RDA0
Ensembl - ENSG00000157404
  
Related genetic diseases (OMIM): 606764 - Gastrointestinal stromal tumor, familial, 606764
  273300 - Germ cell tumors, somatic, 273300
  601626 - Leukemia, acute myeloid, 601626
  154800 - Mast cell disease, 154800
  172800 - Piebaldism, 172800
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kitaENSDARG00000043317Danio rerio
 kitbENSDARG00000056133Danio rerio
 KITENSGALG00000038634Gallus gallus
 KitENSMUSG00000005672Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CSF1R / P07333 / colony stimulating factor 1 receptorENSG0000018257840
P16234 / PDGFRA / platelet derived growth factor receptor alphaENSG0000013485335
P09619 / PDGFRB / platelet derived growth factor receptor betaENSG0000011372133
FLT3 / P36888 / fms related tyrosine kinase 3ENSG0000012202531
FLT1 / P17948 / fms related tyrosine kinase 1ENSG0000010275529
KDR / P35968 / kinase insert domain receptorENSG0000012805229
FLT4 / P35916 / fms related tyrosine kinase 4ENSG0000003728029
FGFR3 / P22607 / fibroblast growth factor receptor 3ENSG0000006807824
RET / P07949 / ret proto-oncogeneENSG0000016573123
FGFR1 / P11362 / fibroblast growth factor receptor 1ENSG0000007778223
FGFR4 / P22455 / fibroblast growth factor receptor 4ENSG0000016086723
FGFR2 / P21802 / fibroblast growth factor receptor 2ENSG0000006646823


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR001245  Serine-threonine/tyrosine-protein kinase, catalytic domain
 IPR001824  Tyrosine-protein kinase, receptor class III, conserved site
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR008266  Tyrosine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR013151  Immunoglobulin
 IPR013783  Immunoglobulin-like fold
 IPR017441  Protein kinase, ATP binding site
 IPR020635  Tyrosine-protein kinase, catalytic domain
 IPR027263  Mast/stem cell growth factor receptor
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade TAS
 biological_processGO:0000187 activation of MAPK activity IDA
 biological_processGO:0001541 ovarian follicle development ISS
 biological_processGO:0002318 myeloid progenitor cell differentiation IEA
 biological_processGO:0002320 lymphoid progenitor cell differentiation IEA
 biological_processGO:0002327 immature B cell differentiation ISS
 biological_processGO:0002371 dendritic cell cytokine production ISS
 biological_processGO:0002551 mast cell chemotaxis IDA
 biological_processGO:0002573 myeloid leukocyte differentiation IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0006687 glycosphingolipid metabolic process IEA
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008354 germ cell migration IEA
 biological_processGO:0008360 regulation of cell shape ISS
 biological_processGO:0008542 visual learning IEA
 biological_processGO:0008584 male gonad development IEP
 biological_processGO:0009314 response to radiation IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010863 positive regulation of phospholipase C activity TAS
 biological_processGO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling TAS
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0018108 peptidyl-tyrosine phosphorylation IDA
 biological_processGO:0019221 cytokine-mediated signaling pathway IDA
 biological_processGO:0019827 stem cell population maintenance TAS
 biological_processGO:0023014 signal transduction by protein phosphorylation IEA
 biological_processGO:0030032 lamellipodium assembly ISS
 biological_processGO:0030097 hemopoiesis TAS
 biological_processGO:0030217 T cell differentiation ISS
 biological_processGO:0030218 erythrocyte differentiation IEA
 biological_processGO:0030318 melanocyte differentiation TAS
 biological_processGO:0030335 positive regulation of cell migration IEA
 biological_processGO:0031274 positive regulation of pseudopodium assembly IEA
 biological_processGO:0031532 actin cytoskeleton reorganization IDA
 biological_processGO:0032762 mast cell cytokine production IDA
 biological_processGO:0035019 somatic stem cell population maintenance IEA
 biological_processGO:0035162 embryonic hemopoiesis ISS
 biological_processGO:0035234 ectopic germ cell programmed cell death IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0035701 hematopoietic stem cell migration IEA
 biological_processGO:0035855 megakaryocyte development ISS
 biological_processGO:0038093 Fc receptor signaling pathway IDA
 biological_processGO:0038109 Kit signaling pathway IDA
 biological_processGO:0038162 erythropoietin-mediated signaling pathway ISS
 biological_processGO:0042127 regulation of cell proliferation TAS
 biological_processGO:0042531 positive regulation of tyrosine phosphorylation of STAT protein IMP
 biological_processGO:0043069 negative regulation of programmed cell death IEA
 biological_processGO:0043303 mast cell degranulation IMP
 biological_processGO:0043406 positive regulation of MAP kinase activity IEA
 biological_processGO:0043410 positive regulation of MAPK cascade IMP
 biological_processGO:0043473 pigmentation ISS
 biological_processGO:0043552 positive regulation of phosphatidylinositol 3-kinase activity TAS
 biological_processGO:0043586 tongue development IEA
 biological_processGO:0045747 positive regulation of Notch signaling pathway IEA
 biological_processGO:0046427 positive regulation of JAK-STAT cascade IMP
 biological_processGO:0046686 response to cadmium ion IEA
 biological_processGO:0046777 protein autophosphorylation IDA
 biological_processGO:0046854 phosphatidylinositol phosphorylation IEA
 biological_processGO:0048066 developmental pigmentation IEA
 biological_processGO:0048070 regulation of developmental pigmentation IEA
 biological_processGO:0048103 somatic stem cell division IEA
 biological_processGO:0048170 positive regulation of long-term neuronal synaptic plasticity IEA
 biological_processGO:0048565 digestive tract development ISS
 biological_processGO:0048863 stem cell differentiation ISS
 biological_processGO:0050673 epithelial cell proliferation IEA
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound ISS
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IMP
 biological_processGO:0051897 positive regulation of protein kinase B signaling TAS
 biological_processGO:0060326 cell chemotaxis IDA
 biological_processGO:0060374 mast cell differentiation TAS
 biological_processGO:0070662 mast cell proliferation TAS
 biological_processGO:0097067 cellular response to thyroid hormone stimulus IEA
 biological_processGO:0097324 melanocyte migration ISS
 biological_processGO:0097326 melanocyte adhesion ISS
 biological_processGO:0120072 positive regulation of pyloric antrum smooth muscle contraction IEA
 biological_processGO:1904251 regulation of bile acid metabolic process IEA
 biological_processGO:1904343 positive regulation of colon smooth muscle contraction IEA
 biological_processGO:1904349 positive regulation of small intestine smooth muscle contraction IEA
 biological_processGO:1905065 positive regulation of vascular smooth muscle cell differentiation IDA
 cellular_componentGO:0001669 acrosomal vesicle IEA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042629 mast cell granule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0002020 protease binding IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004713 protein tyrosine kinase activity TAS
 molecular_functionGO:0004714 transmembrane receptor protein tyrosine kinase activity IDA
 molecular_functionGO:0004716 obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity TAS
 molecular_functionGO:0005020 stem cell factor receptor activity IEA
 molecular_functionGO:0005088 Ras guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019955 cytokine binding IDA
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity TAS


Pathways (from Reactome)
Pathway description
PIP3 activates AKT signaling
Signaling by SCF-KIT
Regulation of KIT signaling
Constitutive Signaling by Aberrant PI3K in Cancer
RAF/MAP kinase cascade
PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
TFAP2 (AP-2) family regulates transcription of growth factors and their receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000133 Gonadal dysgenesis 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000598 Abnormality of the ears 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000953 Hyperpigmentation 
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
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 HP:0001025 Urticaria 
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 HP:0001034 Hyperpigmented macules 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001067 Neurofibromas 
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 HP:0001072 Thickened skin 
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 HP:0001100 Heterochromia iridis "Heterochromia iridis is a difference in the color of the iris in the two eyes." [HPO:curators]
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 HP:0001176 Large hands 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001428 Somatic mutation 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001880 Eosinophilia "Increased count of eosinophile granulocytes in the blood." [HPO:sdoelken]
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 HP:0001903 Anemia 
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 HP:0001939 Metabolism abnormality 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002019 Constipation 
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 HP:0002027 Abdominal pain 
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 HP:0002211 White forelock 
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 HP:0002226 White eyebrows 
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 HP:0002227 White eyelashes 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002648 Abnormality of skull shape "An abnormality of the shape of the skull." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002863 Myelodysplasia 
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 HP:0003745 Sporadic 
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 HP:0004808 Acute myeloid leukemia "A form of leukemia characterized by overproduction of an early myeloid cell." [HPO:curators]
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 HP:0005214 Intestinal obstruction 
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 HP:0005506 Chronic myelogenous leukemia 
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 HP:0005587 Profuse pigmented skin lesions 
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 HP:0006543 Cardiorespiratory arrest 
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 HP:0006753 Increased gastric cancer 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0007443 Partial albinism 
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 HP:0007542 Absent pigmentation of ventral chest, abdomen and limbs 
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 HP:0007544 Piebald pigmentary variegation 
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 HP:0007583 Telangiectasia macularis eruptiva perstans 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008069 Neoplasia of the skin 
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 HP:0009792 Teratoma "Teratomas are germ-cell tumors commonly composed of multiple cell types derived from one or more of the three germ layers." [HPO:curators]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0012325 Chronic myelomonocytic leukemia "A myelodysplastic-myeloproliferative disease characterized by monocytosis, increased monocytes in the bone marrow, variable degrees of dysplasia, but an absence of immature granulocytes in the blood." [HPO:probinson, MeSH:D015477]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012539 Non-Hodgkin lymphoma "A typer of lymphoma characterized microscopically by the absence of multinucleated Reed-Sternberg cells." [HPO:probinson]
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 HP:0012733 Macule "A flat, distinct, discolored area of skin less than 1 cm wide that does not involve any change in the thickness or texture of the skin." [HPO:probinson]
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 HP:0100242 Sarcoma "The presence of a `sarcoma` (MPATH:551)." [HPO:sdoelken]
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 HP:0100273 Neoplasia of the colon 
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 HP:0100495 Mastocytosis "The presence of too many `mast cells` (CL:0000097) and CD34+ mast cell precursors in the body." [HPO:sdoelken]
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 HP:0100723 Gastrointestinal stroma tumor 
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 HP:0100743 Neoplasm of the rectum 
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 HP:0100751 Esophageal neoplasm 
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 HP:0100833 Neoplasm of the small intestine "The presence of a `neoplasm` (MPATH:218) of the small intestine." [HPO:probinson]
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 HP:0200151 Cutaneous mastocytosis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000049130 KITLG / P21583 / KIT ligand  / complex / reaction
 ENSG00000121879 P42336 / PIK3CA / phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha  / reaction / complex
 ENSG00000168610 STAT3 / P40763 / signal transducer and activator of transcription 3  / complex / reaction
 ENSG00000110395 CBL / P22681 / Cbl proto-oncogene  / reaction / complex
 ENSG00000173757 P51692 / STAT5B / signal transducer and activator of transcription 5B  / complex / reaction
 ENSG00000151422 FER / P16591 / FER tyrosine kinase  / reaction / complex
 ENSG00000149554 CHEK1 / O14757 / checkpoint kinase 1  / complex / reaction
 ENSG00000145675 P27986 / PIK3R1 / phosphoinositide-3-kinase regulatory subunit 1  / reaction / complex
 ENSG00000154229 PRKCA / P17252 / protein kinase C alpha  / complex / reaction
 ENSG00000179295 PTPN11 / Q06124 / protein tyrosine phosphatase, non-receptor type 11  / complex / reaction
 ENSG00000106070 GRB10 / Q13322 / growth factor receptor bound protein 10  / complex / reaction
 ENSG00000157404 KIT / P10721 / KIT proto-oncogene receptor tyrosine kinase  / complex / reaction
 ENSG00000141738 GRB7 / Q14451 / growth factor receptor bound protein 7  / reaction / complex
 ENSG00000185338 SOCS1 / O15524 / suppressor of cytokine signaling 1  / complex / reaction
 ENSG00000126561 P42229 / STAT5A / signal transducer and activator of transcription 5A  / complex / reaction
 ENSG00000115415 STAT1 / P42224 / signal transducer and activator of transcription 1  / reaction / complex
 ENSG00000115904 SOS1 / Q07889 / SOS Ras/Rac guanine nucleotide exchange factor 1  / complex / reaction
 ENSG00000060656 PTPRU / Q92729 / protein tyrosine phosphatase, receptor type U  / reaction / complex
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / complex / reaction
 ENSG00000154016 GRAP / Q13588 / GRB2-related adaptor protein  / complex / reaction
 ENSG00000100351 GRAP2 / O75791 / GRB2-related adaptor protein 2  / complex / reaction
 ENSG00000096968 JAK2 / O60674 / Janus kinase 2  / complex / reaction
 ENSG00000182511 FES / P07332 / FES proto-oncogene, tyrosine kinase  / complex / reaction
 ENSG00000111252 SH2B3 / Q9UQQ2 / SH2B adaptor protein 3  / reaction / complex
 ENSG00000111679 PTPN6 / P29350 / protein tyrosine phosphatase, non-receptor type 6  / reaction / complex
 ENSG00000033327 GAB2 / Q9UQC2 / GRB2 associated binding protein 2  / reaction / complex
 ENSG00000135605 TEC / P42680 / tec protein tyrosine kinase  / reaction / complex
 ENSG00000170677 SOCS6 / O14544 / suppressor of cytokine signaling 6  / reaction / complex






 

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